Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 seq3 102 1e-16 >seq4 Length=23425844 Score = 102 bits (112), Expect = 1e-16 Identities = 191/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| |||||||| || |||||||| ||||| || | || ||||| || Sbjct 22916480 AAACCCATCCATTTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCGTCATTACCACC 22916421 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | || | || || || ||||| ||||| |||||||| ||||| Sbjct 22916420 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATACA 22916361 Query 14272 TGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || | ||| || ||| || || | |||||||||||| ||||| ||||| | Sbjct 22916360 AGGA-GCTTTGGACTTGGCTTTGTCGAATAAGTCTCGCACTCTCGATGCACCCACACCAA 22916302 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| || ||||| | | ||| | ||| || ||| || || || |||||| | Sbjct 22916301 CAAACAATTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCAG 22916242 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | | ||| || || || || || || || || || ||| Sbjct 22916241 CCACGGCCCGAGCCAGAAGAGTTTTTCCGGTACCCGGT 22916204 >seq3 Length=39782674 Score = 102 bits (112), Expect = 1e-16 Identities = 179/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| || || | || || | || || ||||| || || ||||| | || Sbjct 22913396 TGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCATTAACCCA 22913337 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || || |||||||||||||| | ||| || || |||||||| || ||||| ||||| Sbjct 22913336 CGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 22913277 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || || | ||||||||||| || | | | |||| |||||||| |||| Sbjct 22913276 GCAAATGCCAAAATCCGCTCAGCAAATGA---CTCCGTGCTGTCAATCCACTTCAACGCC 22913220 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 130267 || | ||||| |||| || ||| ||||| || | || || | ||| | ||||| Sbjct 22913219 CAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCGATTCTTC 22913160 Query 130268 TCTGATGGATCTTTGATGTA 130287 || | |||||||||||| Sbjct 22913159 TCATTCGAATCTTTGATGTA 22913140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433731216400