Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq3 107 2e-18 >seq7 Length=19226500 Score = 122 bits (134), Expect = 1e-22 Identities = 284/421 (67%), Gaps = 22/421 (5%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||| || |||||| | | | Sbjct 3120278 TCAAGAATGTCTGCCCTGTTTGTTGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 3120335 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || |||| ||| ||||||| |||||||| ||||| |||||| | Sbjct 3120336 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 3120390 Query 9675 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 ||||||| || ||| | || ||| || |||||||| ||||||| || || | Sbjct 3120391 -ACCACCAATTCCAGTGCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAA 3120449 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCAC 9786 |||| ||| |||||| || |||| |||||||| || || | || || | Sbjct 3120450 TGCAAGGTGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACTCTAGAAGCACCAAT 3120507 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 ||||||||||||||| ||||| | | | | | || | || || |||||| | || Sbjct 3120508 ACCAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGGACACCTGCTT 3120566 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| |||||||| ||| || | |||||| || || || || ||| | ||||| Sbjct 3120567 CACCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCGGTTCCAGGAGGACCAACAAGGAGAA 3120626 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||||| ||||| || ||| || | | ||||| || | ||||||||| |||| Sbjct 3120627 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCA 3120686 Query 9966 C 9966 | Sbjct 3120687 C 3120687 >seq3 Length=39782674 Score = 107 bits (118), Expect = 2e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 ||||||||| | | ||| | || || | || || || ||| | | ||||| || || Sbjct 22913157 TGAGAAGAATCGCTTGTTTCATGCTATTGATACTGTCCCCTGTGTCAAGAAGAAGGCCGA 22913216 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 |||||| |||||||| |||| | | | | || ||||||||||| | || ||||| Sbjct 22913217 TTGGGCGTTGAAGTGGATTGACAGCACGGAG---TCATTTGCTGAGCGGATTTTGGCATT 22913273 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| ||||||||||| || |||||||| ||| ||||| |||||| ||| | || || Sbjct 22913274 TGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGTTCTATTTTCTGGTTGAAAAA 22913333 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 || || | ||||| || || ||||| |||||| | || || | || || || || Sbjct 22913334 ACGTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGATTTCAAGAGATGAAGGTCT 22913393 Query 94941 CCA 94943 || Sbjct 22913394 TCA 22913396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259414755600