Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 >seq3 Length=39782674 Score = 123 bits (136), Expect = 3e-23 Identities = 313/464 (67%), Gaps = 14/464 (3%) Strand=Plus/Plus Query 59675 TTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAAT 59734 || ||||||| |||||||||||| ||||| ||||||||||| || |||||| || Sbjct 22912953 TTCCGACGAGAAGCATTTCATCACTCACGTCCTTGCCTTCTTCGCTGCCTCTGATGGTAT 22913012 Query 59735 TGTGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGG 59792 || |||| || | | | | | ||| ||||| || || | || || | | | Sbjct 22913013 CGTCTTGGAGAACCTTGCC--GGTCGGTTCATGAAGGAAGTTCAAGTCGCTGAAGTCAGA 22913070 Query 59793 TCGTTCTACGCGTATC--AGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||||| || || | | | | | |||| || || ||||||| ||| || Sbjct 22913071 GCCTTCTACG-GTTTCCAAATTGCT-ATCGAGAACATTCATTCCGAGATGTATAGTCTTC 22913128 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 | |||| | | |||| ||| || | |||||| | | |||| | ||| || || | Sbjct 22913129 TCCTCGAAACTTACATCAAAGATTCGAATGAGAAGAATCGCTTGTTTCATGCTATTGATA 22913188 Query 59911 C-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAG 59967 | |||||| | || || | || || || ||||| || ||||||| || | |||| Sbjct 22913189 CTGTCCCCTGT-GTCAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGACAGCACGGAG 22913247 Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 |||||||| | || | | || ||||| || || || ||||| |||||||| || Sbjct 22913248 --TCATTTGCTGAGCGGATTTTGGCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGGTA 22913305 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCA 60087 |||||| ||||||||||| | ||||| ||||| | ||||| || || | ||||| | Sbjct 22913306 GTTTCTGTTCTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAA 22913365 Query 60088 ACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||||| ||||||| | || || || || ||| || |||||| Sbjct 22913366 ACGAGTTGATTTCAAGAGATGAAGGTCTTCATTGTGATTTTGCA 22913409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523497253600