Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 159 2e-34 seq6 143 2e-29 seq1 107 1e-18 >seq3 Length=39782674 Score = 159 bits (176), Expect = 2e-34 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||||||||||||||||| || || | | |||||||| || ||||| ||||| Sbjct 19996058 TCCTTTTGAATGTTATAATCTGCCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAA 19995999 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | |||||||||||| || | |||||||| ||| |||| || | ||| || | Sbjct 19995998 ATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTGGATC-TTAGCTTTCACATT 19995940 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | |||||| || |||||||||||||| ||| || ||||| |||||||| |||||||| Sbjct 19995939 ATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCAC 19995880 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 19995879 AAAAATTTGCAT 19995868 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||| ||| ||||||||||||||| ||||| | Sbjct 4360576 CCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 4360635 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | ||| || || || || |||| | || ||||| || || Sbjct 4360636 AGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGG 4360695 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | |||||| || ||| |||||| |||||| || Sbjct 4360696 ATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAAC 4360754 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| || ||||| Sbjct 4360755 CTCCAATGTGATGGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 4360802 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||||||||| || ||||| || || || ||||| | ||| ||||| |||| || Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||| ||||| ||||| || | | ||||||||| || || | ||||| || ||| | Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-T 19995503 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || ||||| || || | |||||| || ||| ||||| || | ||| || |||| Sbjct 19995502 GAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTT 19995443 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| || || || ||||| Sbjct 19995442 TGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 >seq6 Length=29076228 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | ||||| ||| |||||| || ||||| ||||| | | Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| ||||||||||| || | | |||||||| || || Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | ||| ||||| |||||| || Sbjct 26767458 ATTCCCTCCTTGTCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAAC 26767516 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| ||||| || |||||||||||||| Sbjct 26767517 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | ||||||||| | || |||||| |||||||| ||||| | Sbjct 26767110 CCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCC 26767169 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | |||||||| || || || || || || || | ||| ||||| || || Sbjct 26767170 AGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 26767229 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | || ||| || ||| ||||| |||||| || Sbjct 26767230 ATTCCCTCCTTGTCTTGGATC-TTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAAC 26767288 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| ||||| || |||||||||||||| Sbjct 26767289 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | ||||| ||| |||||| || ||||||||||| | | Sbjct 26767566 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 26767625 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| ||||||||||| || | | |||||||| || || Sbjct 26767626 AGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 26767685 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| |||| || ||| || || || || | || || Sbjct 26767686 ATTCCCTCCTTGTCCTGGATC-TTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGAC 26767744 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 26767745 CTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| ||||| || || || ||||||||||||||||||||||| | Sbjct 9620090 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCA 9620149 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 9620150 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 9620209 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 9620210 ATACCTTCCTTGTC 9620223 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||||| || |||||| || |||||||| || | Sbjct 26767794 CCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCC 26767853 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || ||||| || || || || || | |||||||||||| || || Sbjct 26767854 AAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGA 26767913 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||| || | || ||| | || ||||| ||| || Sbjct 26767914 ATGCCCTCTTTGTCCTGGATC-TTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 26767972 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | |||||||| |||||||||||| Sbjct 26767973 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 >seq1 Length=29149675 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||||||||| | ||| || | | ||||| || || || |||||||| Sbjct 6810658 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAA 6810717 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| ||| ||||| ||| || Sbjct 6810718 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC-CTGAATTTTTGCTTTCACAT 6810776 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||| || |||||||| |||| || || || || || || || || |||| Sbjct 6810777 TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCA 6810836 Query 34694 CAAAAATCTGCAT 34706 | || |||||||| Sbjct 6810837 CGAAGATCTGCAT 6810849 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | || || ||| ||||||||||||||| ||||| | Sbjct 6810851 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCC 6810910 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || || || || |||||||| || || | ||| ||||| || || Sbjct 6810911 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 6810970 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| || | || ||| | |||||||||| ||| || Sbjct 6810971 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAAC 6811029 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | ||||| |||||||| ||||| Sbjct 6811030 CTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728871204270