Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq6 113 4e-20 seq1 113 4e-20 seq5 98.7 9e-16 >seq3 Length=39782674 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||||||||| || ||||| | || || || || |||||| || Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||| ||||| ||||| |||||||| ||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||| | | || | || || || ||| | || ||| | ||| || || |||||||||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGAC-GGCCGAACGCTTGCCGATTACAA 19995590 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||| || || | |||||||| Sbjct 19995591 TATCCAGAAGGAATCTACACTCCATTTGGT 19995620 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || || || ||||| | ||||| ||||| |||||| || Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| |||||||||||||| ||||| |||||||| || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | || || || || | | || ||||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | ||||||||| | ||| | || || || || Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGGTAT 19995869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | ||||| || | ||||| | |||||||| || Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| || || || || ||||| || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | ||||| | ||| | | ||||| ||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || || ||||| || | || ||||| ||||| || Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGAAT 19996097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | || || ||| | || || | ||||| ||| || Sbjct 19996096 ATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTCG 19996155 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || |||||||||||||| || || || || |||||| Sbjct 19996156 GACACCATTGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCAA 19996215 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||||||||| || || ||| | | |||||||| Sbjct 19996216 CAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACAAT 19996275 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| || | || | || | || |||| |||||| Sbjct 19996276 ATCCAGAAAGAGTCCACACTCCACCTTGTCCTCCGCCTGCGCGGTGGC 19996323 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || || || || Sbjct 4360802 ATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTCA 4360743 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| || ||||| || || || || || || || Sbjct 4360742 GACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 4360683 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | |||| | ||| || || |||||||| || | || | ||||||||||| Sbjct 4360682 CAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACAAC 4360623 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | || | ||| | || ||||| || Sbjct 4360622 ATTCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTAT 4360573 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| | | ||| | | || ||||| || ||| || Sbjct 4361030 ATGCAAATCTTTGTGAAAACTCTCCACAGAAAGACACTAACCCTTGAGGTTGAAAATTCT 4360971 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || |||||||| | ||| ||||| ||||| | ||| Sbjct 4360970 GATACTATCGAAAATGTAAAGGCTAAGATTCAAGATATAGAGGGCATCCCACCATACCAA 4360911 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || | ||||||||||| ||| ||| | |||| || ||| Sbjct 4360910 CAGAGATTAATTTTAGCTGGTAGGCAATTGGAAGATAGTAAGACTATAGCCGACTATAAC 4360851 Query 27168 ATTCAAAAGGAGTC 27181 ||||||| ||| || Sbjct 4360850 ATTCAAACGGAATC 4360837 >seq6 Length=29076228 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || || || || || || || Sbjct 26767336 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767277 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || || || ||||| || || Sbjct 26767276 GACACCATTGATAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 26767217 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || | ||||| | ||| | | ||||||||| Sbjct 26767216 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCTGATTACAAC 26767157 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||||| |||||||| | ||| | ||||||| || Sbjct 26767156 ATTCAGAAGGAGTCAACCTTGCATTTGGTGCTTCGTCTCAGGGGTGGAAT 26767107 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| | || || | || ||||| ||| Sbjct 26767108 ATGCAAATTTTTGTTAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 26767049 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| |||||||| ||||| |||||||| || || || || Sbjct 26767048 GACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 26766989 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || | ||||| | ||| | | ||||||||| Sbjct 26766988 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTCGCTGATTACAAC 26766929 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || ||||| | || ||||| Sbjct 26766928 ATTCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCCGTGGTGG 26766882 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || || || || || || || Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || || || || || || ||| Sbjct 26767504 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767445 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || ||| | || ||| || ||| || ||||||||||| Sbjct 26767444 CAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAAC 26767385 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || |||||| | || ||||| || Sbjct 26767384 ATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCGTCTTCGTGGTGGTAT 26767335 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 27074 AATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACA 27133 ||| || ||||| ||||| || || || || || ||| | ||||| | || || || || Sbjct 9620230 AATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCA 9620171 Query 27134 ATTGGAAGACAGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTACATT 27192 ||||||||| || ||| || || | ||||| ||||||||||||||||| ||| | || | Sbjct 9620170 ATTGGAAGATGGT-CGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACT 9620112 Query 27193 TGGTTTTG 27200 |||||||| Sbjct 9620111 TGGTTTTG 9620104 >seq1 Length=29149675 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||| ||| | ||||| | || || || | || Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| ||||| |||||||| || || || || Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || |||| || | ||| | | ||||||||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | ||| | ||| || |||| || || Sbjct 6810897 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTTCGTCTGAGGGGAGGAAT 6810848 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || ||| | || ||||| || Sbjct 6810849 ATGCAGATCTTCGTGAAGACCTTGACGGGAAAGACCATCACTTTGGAGGTGGAGAGTTCT 6810790 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||| ||||| || || || ||||| || || Sbjct 6810789 GATACAATCGACAATGTGAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGACCAG 6810730 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || ||||||| | |||| || | ||||| ||| Sbjct 6810729 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTATAAC 6810670 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||||| | || | || | ||| | || |||||| Sbjct 6810669 ATTCAGAAGGAGTCGACCCTTCACCTCGTCCTTCGTCTCCGTGGTGGC 6810622 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| || ||||| ||| | || || ||||| ||||| | || Sbjct 6811665 CATGCAGATCTTTGTAAAAACCCTTACCGGAAAGACAATCACCCTTGAGGTGGAGTCTTC 6811606 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| || || || || || ||||| || || || || || Sbjct 6811605 TGACACTATTGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGAATCCCCCCGGACCA 6811546 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||| || || ||| | || ||| | ||| || |||||||||| Sbjct 6811545 GCAACGATTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 6811486 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || | || | || | || |||||||| Sbjct 6811485 TATCCAGAAGGAATCAACTCTCCACCTCGTGCTCCGGCTCCGTGGTGGCAT 6811435 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||||| ||||| ||| |||| || || || ||||| | || Sbjct 6811437 CATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTC 6811378 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || || || ||||| || || || || || Sbjct 6811377 CGATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 6811318 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | |||||| || || |||||||| | || || |||||||||| Sbjct 6811317 GCAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGAACACTTGCCGATTACAA 6811258 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | ||| | || | ||| | || ||||| || Sbjct 6811257 CATCCAGAAGGAATCCACTCTTCATCTTGTCCTCCGTCTCCGTGGTGGTAT 6811207 >seq5 Length=28023477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || || ||| | || ||||| ||||| || | Sbjct 21959965 CCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCT 21960024 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | || || | ||||| ||| || || ||||| ||||| || || || || | Sbjct 21960025 CCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACC 21960084 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||||| || | |||||| || || | || ||| | || | |||| |||| Sbjct 21960085 AGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACA 21960144 Query 27166 ACATTCAAAAGGAGTCGAC 27184 ||||||| ||||| || || Sbjct 21960145 ACATTCAGAAGGAATCCAC 21960163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917367068800