Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq190 569 2e-157 seq1 158 1e-33 seq7 107 2e-18 >seq190 Length=155293 Score = 569 bits (630), Expect = 2e-157 Identities = 703/956 (74%), Gaps = 4/956 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 1210 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1152 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1151 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 1092 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || || || || || | |||| | ||| Sbjct 1091 TCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCA 1032 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | ||||| |||||||| |||||||| || | ||||| |||||| | ||| Sbjct 1031 GCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATAC 972 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || | || |||| | |||||| | | ||| | || ||||||| Sbjct 971 AACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATG 912 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 911 GGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 852 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | ||||| | || |||||| | | || ||| | ||||||||| Sbjct 851 TCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGC 792 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||| ||||||||||| || || || ||||| |||||||| ||| |||||||||| Sbjct 791 TTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 732 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || |||||||||||||| ||| | || ||||| ||||| || || Sbjct 731 GCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGC 672 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTT-AGAGAGAC 176744 || || || ||| || ||||| || | || |||||| | ||| | || || || Sbjct 671 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTA-AGTTGATCAGGGAAAC 613 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 612 CACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAA 553 Query 176805 CATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 || |||||||| || ||||| ||||| || | |||||||| |||||| |||||| || Sbjct 552 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 493 Query 176865 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGC 176924 ||| | | | || |||||||| || || | || || || | ||||||| || || Sbjct 492 CTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGC 433 Query 176925 AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTT 176984 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 432 TTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 373 Query 176985 AGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 || | ||| || ||| ||| |||| ||||| |||||||||| || ||||| Sbjct 372 TGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 313 Query 177045 TATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 312 TATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 257 Score = 127 bits (140), Expect = 2e-24 Identities = 201/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 19296 CCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGT 19355 |||||||| | || ||||||||||| ||| | ||| | || ||| | | ||| ||||| Sbjct 121116 CCTGTAACTATTCAATATCCTTACGAAAAATTAATAGCATCGGAGCGTTTCCGCGGTCGA 121057 Query 19356 ATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATC 19415 || || | ||| || || || || || || ||||| | ||||| | ||||| ||||| Sbjct 121056 ATCCATTTTGAATTCGATAAATGCATTGCTTGTGAAGCATGTGTTCGTGTATGTCCTATA 120997 Query 19416 AATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACA--AAGAAGAAAGAACTTAGAA 19473 |||| || || || |||||| || |||| || | |||||| | | | Sbjct 120996 GATCTCCCCGTTGTTGATTGGAAATTG--GAAACGGATATTCGAAAGAAACGATTGCTTA 120939 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 |||| || || || || ||||| || || ||||||||||| || ||||| |||| Sbjct 120938 ATTACAGTATTGATTTCGGGATCTGTATATTTTGTGGTAACTGCGTTGAATATTGTCCAA 120879 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 120878 CAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 120833 >seq1 Length=29149675 Score = 158 bits (174), Expect = 1e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 |||||||| || || ||||| || || | ||||| |||||| | || |||||||| ||| Sbjct 9383848 ATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTAAATGGTTTCAATTTC 9383907 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | || | ||| || ||| ||| |||| ||||| ||||| Sbjct 9383908 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAAC 9383967 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| || |||||||||||||||||||| || |||||||||||||||||||| || ||| Sbjct 9383968 CGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 9384027 Query 177091 CTTGCTGCTG 177100 || ||||||| Sbjct 9384028 CTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 107 bits (118), Expect = 2e-18 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 177009 TACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAA 177068 ||| |||| ||||| |||||||||| || |||||||||||||||||||| || ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 177069 TGCTCACAACTTCCCACTTGACCTTGCTG 177097 ||||||||||||||| || ||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603492966700800