Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq1 89.7 4e-13 seq5 86.0 5e-12 >seq3 Length=39782674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || || || || ||||| ||||||||||| ||||| |||| || Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || || || ||||| ||||| | ||| ||||||| || | || |||||| | | | Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 19995503 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || ||| || || | | | | ||||| ||| ||||| || | ||||| Sbjct 19995502 GAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCT---TTCCACCTCGAGGGTGATTG 19995446 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || || ||||| || || |||||||||| Sbjct 19995445 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCT 19995410 >seq1 Length=29149675 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| || || || || || |||||||||||||||||| | || || | ||| Sbjct 6811233 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTG 6811292 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || | |||||||| | ||| | | || || ||| ||| || Sbjct 6811293 CTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTT 6811352 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | |||||| |||||||| || | |||||| | ||||| || Sbjct 6811353 GGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 6811412 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||||||||| Sbjct 6811413 AAGAGTCTTGACAAAGATTTGCAT 6811436 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| ||||||||||| ||||| |||| ||||| || || || || || Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | || |||||||| | ||| | | || || ||| ||| || | || | ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTT-GGCTTTAACGTT 6811592 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || |||||||| || | ||||| | ||||| || || ||||| || Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 6811653 AAAGATCTGCAT 6811664 >seq5 Length=28023477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||| | || |||||| || || || || || || ||||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 |||||||| |||| |||||||| || || || || || | |||||||||||| | || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || |||| | | | |||||| ||| || Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACT 21960014 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || ||||| || ||||| || ||||| ||||| Sbjct 21960013 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544605333470