Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq5 107 1e-18 seq1 104 2e-17 seq3 102 6e-17 >seq6 Length=29076228 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| ||||| || || ||||| || || ||||| || | Sbjct 26768020 ATGCAGATTTTCGTGAAAACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 26767961 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || || |||||||| || | || ||||| ||| Sbjct 26767960 GACACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCAGACCAA 26767901 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||||| || || | || ||||| | ||| || ||| Sbjct 26767900 CAGCGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGTACTTTGGCCGACTATAAC 26767841 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 26767840 ATCCAGAAGGAGTCTAC 26767824 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||| | Sbjct 26767792 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 26767733 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||| || ||||| || || | || ||||| ||| Sbjct 26767732 GATACCATCGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767673 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || ||||| || |||| || || | | ||||| ||| Sbjct 26767672 CAAAGACTCATCTTTGCCGGTAAGCAACTAGAGGACGGCCGTACCCTTGCTGATTATAAC 26767613 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 26767612 ATCCAGAAGGAGTCCAC 26767596 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || || || || ||||| || || ||||| || | Sbjct 26768248 ATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTCT 26768189 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| ||||| | || || ||||| Sbjct 26768188 GATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 26768129 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || |||||||| || || | || || || | ||| |||||| Sbjct 26768128 CAACGTCTCATCTTCGCTGGAAAACAACTCGAGGATGGCCGTACCTTGGCCGACTACAAC 26768069 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 26768068 ATCCAGAAGGAGTCCAC 26768052 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| ||||| || ||||| || ||||| | || || || | | Sbjct 26767109 AATGCAAATTTTTGTTAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTC 26767050 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| ||||| | || || || | Sbjct 26767049 CGACACGATCGATAATGTGAAAGCTAAAA-TTCAGGACAAGGAAGGCATCCCTCCGGACC 26766991 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || || || || || || ||||| | | ||| | | ||||||| Sbjct 26766990 AGCAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTCGCTGATTACA 26766931 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 26766930 ACATTCAGAAGGAGTCCAC 26766912 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| ||| Sbjct 26767504 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767445 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || ||||| || |||| || || | | |||||||||| Sbjct 26767444 CAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAAC 26767385 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 26767384 ATCCAGAAGGAGTCCAC 26767368 >seq5 Length=28023477 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || |||||||||||||| || | | Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCC 21960026 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | ||| || ||||| ||||| | || || || || Sbjct 21960027 GATACCATCGACAATGTCAAGGC-AAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 21960085 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || ||||| || || || || |||| || || ||| ||| ||||| Sbjct 21960086 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAA 21960145 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 21960146 CATTCAGAAGGAATCCAC 21960163 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| ||||| || || || | || ||||| || | Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | || ||||| || Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| || || ||||| || | | | ||| | | ||||||||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 6810897 ATTCAAAAGGAGTCCAC 6810881 >seq3 Length=39782674 Score = 102 bits (112), Expect = 6e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || || || || ||||| | ||||| || | Sbjct 19996095 AATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTC 19996154 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || ||| |||||||| || | || ||||||| Sbjct 19996155 GGACACCATTGACAATGTGAAGGC-GAAGATTCAAGACAAAGAGGGGATTCCTCCAGATC 19996213 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || |||||| |||| || | || || || | ||||||| Sbjct 19996214 AACAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACA 19996273 Query 23789 ACATACAAAAAGAGTCCACA 23808 | || || |||||||||||| Sbjct 19996274 ATATCCAGAAAGAGTCCACA 19996293 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||| | || ||||| || ||||| | || ||||| | | Sbjct 4360803 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTC 4360744 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| || |||| | |||| | ||||| || ||| | || || || | Sbjct 4360743 AGACACCATTGATAACGTTAAGGCTAAAA-TCCAGGACAAGGAGGGTATCCCTCCTGACC 4360685 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | |||| || || || || ||| |||| || | ||| || | | |||||||| Sbjct 4360684 AGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACA 4360625 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 4360624 ACATTCAAAAGGAGTCCAC 4360606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008817296520