Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 >seq3 Length=39782674 Score = 190 bits (210), Expect = 2e-43 Identities = 574/872 (66%), Gaps = 21/872 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| || || ||||||||||| || |||| || ||||| Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 4317 TCCATAAAATCAAACGGATTAGTTGCG--TTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 ||||| ||||||| ||||| |||| ||||| ||| ||| || | ||| ||| Sbjct 22913642 TCCATCCAATCAAATGGATT--TTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAA 22913585 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 ||||| || || |||||||| || || |||||||| || || | || ||||||| || Sbjct 22913584 CCAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTA 22913525 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 ||| || | || || |||| || || |||||| | || || || | | Sbjct 22913524 GAGCCACCGGCAAAGC--ATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAAC 22913467 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACG 4551 || || || | | ||| | ||| || || | | | || |||| ||||| | Sbjct 22913466 AATCTCCTTCACTCGATCCACATTCAATTTCTTC-CTCAACAACGAATACAACAAACATG 22913408 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 ||||||||||||| | |||||| ||||| ||||| ||||| || || |||| ||| | Sbjct 22913407 CAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAG 22913348 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAG--CGGCAAATGACCCAGAAAAGAATAT 4669 ||||||| || | ||||| | ||| || |||| | | || | || || ||||| || Sbjct 22913347 GCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTA--CCTGAGAAGAAAAT 22913290 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTGGCTTTGTCTTTAA 4728 || || || ||||| || | |||| | | | || || | |||| || Sbjct 22913289 TCCCTCAACACAAGCAAATGCCAA-AATCCGCTCAGCAAATGACTCCGTGCTGTC---AA 22913234 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| || || ||||| | || || ||||| || || || | || | ||||| | || Sbjct 22913233 TCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAA 22913174 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | || | | || ||| | |||| || ||||| || | || || |||||||| | Sbjct 22913173 ACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCT 22913114 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 | ||||| || || || |||||||| || || ||||| ||| ||| |||| | |||| Sbjct 22913113 CGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTT 22913054 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 ||||||| || || | | | | ||| || || ||||| ||| ||| || | Sbjct 22913053 GAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGA 22912994 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTTTTCCAGTGG 5027 | || || | || |||| || || | || ||||| | ||||| | ||| ||| Sbjct 22912993 AGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAG-GAATCCCAATGG 22912935 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | |||| || | ||| || ||||| | ||||| || || ||||| || || ||| Sbjct 22912934 CGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTG 22912875 Query 5088 TACATAGACCAAATATCAGGATACTGAATCGG 5119 ||||| ||| || | ||||| ||||| || Sbjct 22912874 TACATCTCCCAGATTTGGGGATATTGAATGGG 22912843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048611113270