Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 266 4e-66 seq6 114 2e-20 >seq3 Length=39782674 Score = 266 bits (294), Expect = 4e-66 Identities = 586/874 (67%), Gaps = 16/874 (2%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| || || | |||||| || |||||||| || |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||||||||| |||| || ||||| | | | || ||| || || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | ||||||||| || ||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || | ||| || || || || || ||| | ||||| |||| | ||| Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAATC 22913463 Query 48090 GATGTTACCGTTTCC----TCACTTGGTGGAT--ACAACAAATGTTTAAACATTAAACAT 48143 | || ||| ||| || | | ||||| ||| ||| |||||| Sbjct 22913462 TCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGAAT------ACAACAAACAT 22913409 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||||||||||||||||||||||||||| ||| || ||||| || ||||| || || Sbjct 22913408 GCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCA 22913349 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||||| ||||||||||| | ||| || || | |||| || || ||||| || Sbjct 22913348 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATT 22913289 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT--TGTGTATCC 48321 || || || |||||||| || || | ||| | || || || ||| ||| |||| Sbjct 22913288 CCCTCAACACAAGCAAATGC-CAAAATC-CGCTCAGCAAATGACTCCGTGCTGTCAATCC 22913231 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 || |||||||| ||||||||||| ||||| || | || || ||||||| ||| | Sbjct 22913230 ACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACA 22913171 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || || ||||| |||||| | |||||| || | | |||||||||||| |||| Sbjct 22913170 AGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGG 22913111 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 | ||||| || || || || || || || ||||| || ||| |||| | || || | Sbjct 22913110 AATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAA 22913051 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 | ||| | || || | || | ||||| || || |||||| ||||| || | Sbjct 22913050 CTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAGA 22912991 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || | || || | || |||| || |||| |||||| | || ||| | Sbjct 22912990 AGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGAG 22912931 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 | |||| || | ||| || ||||| || ||||| || || || || || || || |||| Sbjct 22912930 TGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACA 22912871 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | | ||| || | ||||| || ||||| || Sbjct 22912870 TCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | || ||| || | |||||| Sbjct 22590411 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 22590352 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| ||||| Sbjct 22590351 TTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 22590292 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || ||| ||| || | ||| || ||| || ||||| || || Sbjct 22590291 ACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATATT 22590232 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || |||||||| || ||| ||||| | ||| |||||||| Sbjct 22590231 CCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 107 bits (118), Expect = 3e-18 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||||| | |||||||| ||||||||| || |||||| |||| ||||||| ||| Sbjct 22590869 TTCATATCCAATATATAGCTTTTCAAATTCCTCACCCCAACAATCAGCCAATCCCGGGGC 22590810 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAAAGAGAT 78021 |||||||| || | |||||||| || |||| | | || |||| || ||| ||||||| Sbjct 22590809 CTCATTTGGACAAAATAATGACCATTCTCCAT-TACTTTGGACTCTTTGCATGAAGAGAT 22590751 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||| | ||| || ||| ||| |||||||| Sbjct 22590750 CAGGAACCCAAAGTGCATAAAAAAGATCTCG 22590720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667150161600