Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 248 1e-60 seq6 123 4e-23 >seq3 Length=39782674 Score = 248 bits (274), Expect = 1e-60 Identities = 578/868 (67%), Gaps = 4/868 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| ||||| || || | |||||| || |||||||| || |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| ||||| ||||| || ||||| | | | || ||| || || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||||||| || ||||| || || |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| | ||| || || || || || ||| | ||||| ||| | ||| Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAATC 22913463 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||| ||| || | | | | |||| | ||| |||||||||||| Sbjct 22913462 TCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGAATACAACAAACATGCAAAA 22913403 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||||||||| ||||||||||| ||| || ||||| || ||||| || ||||||||| Sbjct 22913402 TCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCATT 22913343 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||||| ||||| | ||| || |||| |||| || || ||||| || || || Sbjct 22913342 AACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTCCCTCA 22913283 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT--TATGAATCCACCTTT 46816 ||| || ||||| | || || | ||| | || || | | | | | ||||||| | Sbjct 22913282 ACACAAGCAAATGCCA-AAATC-CGCTCAGCAAATGACTCCGTGCTGTCAATCCACTTCA 22913225 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 |||||||| ||||| ||||| ||||| || | || || ||||||| ||| | | Sbjct 22913224 ACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCGAT 22913165 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || |||| |||||| | || || || | | |||||||||||| || ||||||| Sbjct 22913164 TCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGGAATGAA 22913105 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 |||| || ||||| || || || ||||| || ||| |||||| | || || || Sbjct 22913104 TGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAACTTCCT 22913045 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | || || | | | ||||| || || |||||| ||||| || || || | Sbjct 22913044 TCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAGAAGGCAA 22912985 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 || || | || |||| || || |||| ||| | || ||| | | |||| Sbjct 22912984 GGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGAGTGTCTT 22912925 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 || | ||| || ||||| || |||||||| || || || || || || ||||| | || Sbjct 22912924 GAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTCCC 22912865 Query 47177 ATATATCACGATATTGGATCGGAAAAAT 47204 | || | ||||||| || || || || Sbjct 22912864 AGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 123 bits (136), Expect = 4e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| ||||| | ||| | || | || ||| || | ||| || Sbjct 22590411 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 22590352 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATG-CACGAATATTACTAATAGA 76872 |||||||| |||||||||||| ||||||||| || |||| |||||||||| || || Sbjct 22590351 TTAGATGTCCCATTTGTTCCACGAATATAACTACC-CATGGCACGAATATTGTGGATGGA 22590293 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || ||| || ||| | |||||| ||| || || ||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || ||||||||||| ||| ||||| | ||| |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 ||||||| |||||| | ||||||||| || |||||| |||| |||| || || Sbjct 22590869 TTCATATCCAATATATAGCTTTTCAAATTCCTCACCCCAACAATCAGCCAATCCCGGGGC 22590810 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA-ACCCGTTTCATAAAGAGAT 76616 ||||| ||||| | |||||||| || |||| | | || || | || ||| ||||||| Sbjct 22590809 CTCATTTGGACAAAATAATGACCATTCTCCAT-TACTTTGGACTCTTTGCATGAAGAGAT 22590751 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||| | ||| || ||| ||| |||||||| Sbjct 22590750 CAGGAACCCAAAGTGCATAAAAAAGATCTCG 22590720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932706780800