Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq190 684 0.0 seq1 205 1e-47 seq7 102 1e-16 seq3 98.7 1e-15 seq2 82.4 9e-11 >seq190 Length=155293 Score = 684 bits (758), Expect = 0.0 Identities = 749/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| | ||||| ||||||||| | ||||| || || | || |||||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || | ||| | ||||| |||| || || |||||||| | |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| ||||| || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || |||||||| || | ||| | || || || || | ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| || || | ||||| ||| | || |||||||||||||| | || | || Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | |||||| | |||| || || ||||||||||| ||||||||| | || ||| Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 886 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| ||||||||||||||||| |||||| ||| || |||||||| || || || || Sbjct 885 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGC 826 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || | || || | |||||||| ||| ||| |||||||| || || || Sbjct 825 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 766 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| ||| |||| ||||| || |||||||||||||| |||||||| Sbjct 765 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 706 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 ||||||||| | ||||| |||||||| ||||| || || || |||||||| ||||| || Sbjct 705 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 646 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854 ||| |||| ||||| | || | | |||||||| || ||| || || | || Sbjct 645 TTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 586 Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914 ||||| ||||||||||| ||||| || || || || || ||||||||||| || ||||| Sbjct 585 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 526 Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 || |||||||||| |||||| || ||||| ||||||||| | || |||||||| || Sbjct 525 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 466 Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAA 184034 ||||||||| || || || ||||||| || ||| | ||| ||||||||||||| || || Sbjct 465 TGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 406 Query 184035 CCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACAC 184094 | | |||||||| || |||||||| || | ||||| ||||||||||||| | || || Sbjct 405 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 346 Query 184095 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 184154 |||||| || || | ||||||||| |||||| |||||||| ||||| || |||||||| Sbjct 345 CTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 286 Query 184155 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 ||||||||||||||| ||||| ||||||| ||| Sbjct 285 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 500 bits (554), Expect = 1e-136 Identities = 723/1015 (71%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 185961 TTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 186020 |||||| | ||||||||||| | | ||||| || || ||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 186021 TTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTT 186080 || | || ||||| ||| ||| | || | || || ||| |||| || ||||| ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 186081 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCT 186139 || || ||||||||||| || ||||| ||| || | || || ||| | || | | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCT-T 35041 Query 186140 CACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 186199 || || ||||| || ||||||||| | | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 186200 TCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGT 186259 ||||| | ||||||||| | | || |||| ||| | || || || |||| |||||| Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 186260 GGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG 186319 || |||||||| || || | || |||||||||||| | || || |||||| | ||| Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 186320 -TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTG 186378 ||| | | | || || || ||||| || || || || || || || ||||| |||| Sbjct 35222 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 186379 TTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTG 186438 || ||||||||| || || || || || ||||| |||||||| || || |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 186439 GAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGA 186498 | || ||||| || ||| ||||| | | || ||||||| || || || ||||| |||| Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 186499 ATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCC 186558 | ||||| || |||||||| || || || | | || | ||||||||| | || || | Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 186559 ATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAG 186618 |||||| ||| ||||||||||| | | ||| ||||| || ||||| |||||| | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 186619 CATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGT 186678 | || | | || |||| |||||||| ||||| ||||||||||| ||| | || |||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 186679 CACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTG 186738 | || ||||| || |||| ||| |||||| |||||| | |||||||| ||| | |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 186739 TTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTC 186798 | || || | ||| | |||| | | |||| | ||||||| || || ||||| | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 186799 GTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGT 186858 |||| |||||||| || |||||| | | ||||| || ||||| || || ||||| | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 186859 TCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATC 186918 |||||||||| ||||| || || || |||||| | ||||| |||||||| | |||| Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 186919 AACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 | || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 205 bits (226), Expect = 1e-47 Identities = 172/211 (82%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| || ||| | ||| ||||| ||||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||| | |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 |||||||| || || | ||||||||| |||||| |||||||| ||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| |||||||||||||| ||||||||||| ||| | || || ||||| | Sbjct 10226981 CTGATGATACTTATATTCTTGATGCAGCTGAAGAAGCGGGAATAGACTTACCTTATTCTT 10227040 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | || ||||| ||||| || |||||||||||||| | ||||| |||||||||| Sbjct 10227041 GCAGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAAT 10227100 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGAT 171139 | || || |||||||| |||||||| || Sbjct 10227101 CAGACGGGTCATTCCTTGACGATGATCAAAT 10227131 >seq7 Length=19226500 Score = 102 bits (112), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 184090 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 184149 || |||||||| || || | ||||||||| |||||| |||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 184150 AATGCTCACAACTTCCCTCTCGACCTTGCTG 184180 |||||||||||||||||||| ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq3 Length=39782674 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 186417 TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAA 186476 |||||||| || || ||||| || ||||| || ||| ||||| | | | ||||| Sbjct 23202875 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCAA 23202934 Query 186477 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGT 186536 || || || || ||||| ||||| ||||| || |||||||| || || || | | || Sbjct 23202935 GGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGGGC 23202994 Query 186537 GGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGC 186596 | |||| |||| | || || || |||| ||||||||||||||| | ||| ||||| Sbjct 23202995 GTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGATGGG 23203054 Query 186597 GA 186598 || Sbjct 23203055 GA 23203056 >seq2 Length=23174626 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| | ||||| || |||||| | ||||| || || | || |||||||| || Sbjct 3799830 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3799771 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || | ||| | ||||| |||| || || ||| |||| | |||||||| Sbjct 3799770 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGTCTTCATTGCTGCTCC 3799712 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGG 183353 ||| ||||| || || || || || ||||| ||| |||| Sbjct 3799711 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGG 3799673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622068922582800