Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq190 719 0.0 seq1 192 7e-44 seq7 96.9 4e-15 >seq190 Length=155293 Score = 719 bits (796), Expect = 0.0 Identities = 761/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || || |||||||| | ||||| Sbjct 1184 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| ||||| || ||||| || || ||||| || |||| || || | || ||||||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || ||||||||| |||||||| | ||| ||||||||| ||||||| ||||| | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| || | || |||||| | |||||||||||||||| | || ||| Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 164226 TGTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 | | |||||| | |||| | ||| |||||||||||| |||||||||||| || | Sbjct 946 TTCTACACTTCTTACTTGGTGTAGCATG-TTACATGGGTCGAGAGTGGGAACTTAGTTTC 888 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||||| |||||||||||||||||| || ||||| || |||||||| || ||||| | | Sbjct 887 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACT 828 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 || || ||| || | || || | |||||||| || ||||| | |||||||| || Sbjct 827 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 768 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||||||| || ||||||| |||| | || ||||||||||||||||||||||| |||||| Sbjct 767 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 708 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||| | || ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 707 CCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 648 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| |||| |||||| | || | | || ||||| |||||||| || || | Sbjct 647 GGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 588 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 ||||||| || ||||| || |||||||| || || ||||| || ||||| ||||| ||| Sbjct 587 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 528 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 164704 || || |||| |||||||| ||| ||||||||||| ||||| | || |||||||| Sbjct 527 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 468 Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTC 164764 || || |||||||| || |||||||||| || ||| | || ||||||| ||||| ||| Sbjct 467 GCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTC 408 Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | || Sbjct 407 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 348 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 |||||||| || || | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 347 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 288 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||||||||||||||||| ||||| ||||||| ||| Sbjct 287 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 556 bits (616), Expect = 1e-153 Identities = 738/1019 (72%), Gaps = 4/1019 (0%) Strand=Plus/Plus Query 165153 TTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 165212 |||||| | | || |||||| | || ||||||||||||||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 165213 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 165272 || | || ||||| ||| ||| |||| | || |||||| |||| || || || || Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 165273 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 165331 || || |||||||| || ||| | || ||||||||| | | ||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 165332 TACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGG 165391 || || |||||||| ||||| || | | | | || ||| | || | |||||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 165392 TCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGT 165451 ||||| | ||||| || || | || ||||| ||| | || || || ||||||||||| Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 165452 GGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 165511 || |||||||| || || | ||| |||||||||||| | || || |||||||| || || Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 165512 A-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCG 165570 | || || | | || ||||| ||||| || || ||||| || || |||||||| || | Sbjct 35222 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 165571 TTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCG 165630 || ||| || || || ||||| || || || || |||||||| || || || | Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 165631 GGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGA 165690 | || ||||| || || |||||| | || || |||||||||| ||||| ||||| ||| Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 165691 ATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTC 165750 | || ||||| |||||||| || || || | || |||| || |||| | || |||| Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 165751 ATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAG 165810 |||||| ||| ||||| ||||| || | ||| ||||| || ||||| || ||| | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 165811 CATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGT 165870 | ||| | ||||| | || ||||||||||| ||||||||||||||||| || |||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 165871 CTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTG 165930 | || || ||||| ||||||| |||||| |||||| | || ||||||||| | |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 165931 TTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTC 165990 | || || | || | |||| ||| || |||| | ||||||| || || || || | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 165991 GTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGT 166050 |||| ||||| || || |||||||| || | || || || ||||| || ||||| || | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 166051 TCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACC 166110 ||||||| ||||| || ||| | || ||||| | ||||| ||| |||| || ||| | Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 166111 AACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | |||||||| ||| || | |||||||| || || | || | || ||||| |||||| Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 35879 >seq1 Length=29149675 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTC 164764 || || |||||||| || ||||||||||| || ||| |||| ||||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 |||||||| || || | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 164915 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 || |||||||| |||||||| |||||||| | ||| | || || || | ||||| Sbjct 10226992 TATATTCTTGATGCAGCTGAAGAAGCGGGAATAGACTTACCTTATTCTTGCAGGGCAGGT 10227051 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 || ||||| |||| || || ||| | || || || | || || ||| ||| ||| Sbjct 10227052 GCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCAGACGGGTCA 10227111 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| |||||||| ||||| | ||||| | | | || ||| |||| ||||| Sbjct 10227112 TTCCTTGACGATGATCAAATGGCAAATGGTTACTTGTTAACCTGTATTTCAC-TCCCAAC 10227170 Query 161735 AGC-GATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTG 161773 || |||||||||||| | || | ||||||| |||||| Sbjct 10227171 TGCAGATTGTGTGATTCACACACACAAAGAAGGAGAACTG 10227210 >seq7 Length=19226500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 164822 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGT 164881 || |||||||| || || | ||||||||| ||| || |||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 164882 AATGCTCACAACTTCCCTCTCGACCTTGCTG 164912 |||||||||||||||||||| ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557653075570800