Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=39782674 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || ||||| | || |||||||| || ||| | || |||| | Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | ||||| ||||||| || ||||| ||| |||| ||| ||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || ||| | || || ||| | |||||||| ||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||||||||| ||||| ||| | | || |||||||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 19995638 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| || ||||| ||||| |||||| ||||| ||| | Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || || || || || || |||| || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | |||| ||| || || || | |||||| | ||| |||| |||||||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || | ||||||||| | || |||||||||| Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGG 19996094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || ||||||||||||||| | || |||| Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || || |||||| ||||| ||||| | || || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||||| ||| || || || | || ||| | |||| | || || || ||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || ||||| || | ||||| || || || Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGG 19995866 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 |||||||| || |||| |||||||| || || || | ||| || ||||||||||| Sbjct 19996189 GACAAAGAGGGGATTCCTCCAGATCAACAGAGACTGATCTTTGCTGGAAAACAATTGGAG 19996248 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | || |||| ||||| ||||| || ||||| || ||||| || | || | Sbjct 19996249 GATGGTCGGACATTGGCTGATTACAATATCCAGAAAGAGTCCACACTCCACCTTGTCCTC 19996308 Query 111313 CGTCTGCGCGGTGGC 111327 || |||||||||||| Sbjct 19996309 CGCCTGCGCGGTGGC 19996323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421810223243440