Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq190 699 0.0 seq1 192 7e-44 seq7 105 8e-18 seq3 95.1 1e-14 seq2 82.4 9e-11 >seq190 Length=155293 Score = 699 bits (774), Expect = 0.0 Identities = 755/995 (76%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | || ||||| || | || ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || | || ||| | |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| ||||| || || || || |||||||| || |||| || || | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || |||||||||||| || | ||| | ||| ||||| ||| | ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| ||||| | ||||| ||| | ||||| |||||||||| | || || | Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 177897 CTTCCACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | |||||| | | ||| | ||| ||||||||||| |||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | || ||||||||||| ||||| ||| ||||| || ||||| || || ||||| ||| Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 |||| ||| | |||| || | |||||||| || ||||||| |||||| || || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 || ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||||||| Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | ||||||||||| || || |||||||| || || || || || |||||||| ||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 |||| |||| ||||| | || | | |||||||| || || ||| | || | | Sbjct 646 GTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 587 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| ||||||||||| ||||| || || || ||||| |||||||||||||| || | Sbjct 586 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 527 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 | || ||||||||||||| || ||||||||||| ||||| | || |||||||| | Sbjct 526 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 467 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| || |||||||||| ||| ||| | ||| ||||||| ||||| |||| Sbjct 466 CTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCA 407 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 || | || |||||||| |||||||| || | | |||||||| || || | || | Sbjct 406 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 347 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 ||||||| || || | ||||||||| ||||||||||||||| ||||| || ||||||| Sbjct 346 CCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 287 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||||||||||| ||||| ||||||| |||| Sbjct 286 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAA 252 Score = 529 bits (586), Expect = 2e-145 Identities = 720/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 ||||||||| | | | || || ||||||||||| |||||||| ||||| | || || Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 ||| ||| || | || | || |||||| | || || ||||| || || || || ||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 ||||| || || | || ||| ||| | || ||||| || ||| | || || || || Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTT 35054 Query 179031 TCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAG 179090 || ||||||||| | | | | || || | | | |||||||| || ||||| || Sbjct 35055 TCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAA 35114 Query 179091 GGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGT 179150 |||||||| || ||| ||| | || || || ||| ||||||| || ||||||||| Sbjct 35115 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGT 35174 Query 179151 GCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTAT 179209 || |||| || |||||||||||| | || || |||||| | || || ||| || | | Sbjct 35175 GCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 35233 Query 179210 TCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCT 179269 || ||||| ||||||||||| || || || ||||||||||| ||||| ||||| || || Sbjct 35234 GCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 35293 Query 179270 CATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGAT 179329 || ||||| || || ||||| |||||||||||||| ||||| || ||||| || Sbjct 35294 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTAT 35353 Query 179330 TTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACAT 179389 || || ||| | || || | || || || || || ||||| | ||||| || || || Sbjct 35354 ATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 35413 Query 179390 GATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGT 179449 |||||| || || || | |||||| || |||| || || |||||||||||||| || Sbjct 35414 GATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGT 35473 Query 179450 AGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTAC 179509 ||| || || | ||||| || | || ||||||||||| || || | || || Sbjct 35474 AGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 35533 Query 179510 ACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569 |||| || || || ||||| ||||| ||||| ||||| || ||||| || |||||||| Sbjct 35534 TCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGG 35593 Query 179570 TATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGG 179629 | || || |||||| |||||| |||||||||||||||| ||||| || || | || Sbjct 35594 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 35653 Query 179630 TCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTT 179689 | | |||| | |||| | ||||||| || || ||||| | || |||||||| Sbjct 35654 TTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTT 35713 Query 179690 TGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 179749 ||||| || || ||| | || || || ||||| || || ||||| ||||||||||| || Sbjct 35714 CGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAA 35773 Query 179750 CATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAA 179809 || || || || |||||| | |||||||||||||| | ||||| || |||||||| Sbjct 35774 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 35833 Query 179810 CTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || |||| ||||| || || | || | || |||||||| Sbjct 35834 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || |||||||| || |||||||||||||| ||| | ||| ||||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||| | || |||||||| |||||||| || | | |||||||| || || | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 |||||||| || || | ||||||||| ||||||||||||||| ||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTG 178585 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 176161 CTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACT-ACTCG 176219 |||| ||| |||||||| ||||| ||||| ||||| ||| | || || | || | || Sbjct 10226981 CTGATGATACTTATATTCTTGATGCAGCTGAAGAAGCGGGAATAGA-CTTACCTTATTCT 10227039 Query 176220 TGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAA 176279 ||| | || ||||| ||||| | ||||| || ||| | | ||||| |||| |||||| Sbjct 10227040 TGCAGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAA 10227099 Query 176280 AGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTT 176339 || || |||||||| ||||| || || | |||| | | | || ||| || Sbjct 10227100 TCAGACGGGTCATTCCTTGACGATGATCAAATGGCAAATGGTTACTTGTTAACCTGTATT 10227159 Query 176340 TCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 ||| || || |||||||||||| | || | ||||||| ||||| Sbjct 10227160 TCACTCCCAACTGCAGATTGTGTGATTCACACACACAAAGAAGGAGAACT 10227209 >seq7 Length=19226500 Score = 105 bits (116), Expect = 8e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 || |||||||| || || | ||||||||| ||||||||||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 178552 AATGCTCACAACTTCCCTCTTGACCTCGCTG 178582 |||||||||||||||||||| ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq3 Length=39782674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 179295 TGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCG---CTTCCTACTCTTCCTA 179351 |||||||||||||| ||||| || ||||| || || || | ||||||| ||| Sbjct 23202875 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTC--- 23202931 Query 179352 CAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTG 179411 || || || || || ||||| | ||||| || || |||||||| || || || | || Sbjct 23202932 CAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTG 23202991 Query 179412 GGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACAC 179458 |||| || ||||| || || ||||| |||||||| ||||| || || Sbjct 23202992 GGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATAC 23203038 >seq2 Length=23174626 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| |||| ||| | || ||||| || | || ||||| ||||| || Sbjct 3799830 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3799771 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || | | ||| | |||||||| Sbjct 3799770 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGTCTTCATTGCTGCTCC 3799712 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGG 177755 ||| ||||| || || || || |||||||| || |||| Sbjct 3799711 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGG 3799673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596305783770400