Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 196 1e-44 seq1 167 5e-36 seq5 163 6e-35 seq2 163 6e-35 seq3 147 5e-30 >seq6 Length=29076228 Score = 196 bits (216), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | ||| || || |||||||| || ||||| Sbjct 26767565 ACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGC 26767624 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||||||||| || ||||||||||| | | ||||||||| || Sbjct 26767625 AAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGG 26767684 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| ||||||||||| || ||| ||||||| || || || | |||||| Sbjct 26767685 AATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGAC 26767744 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || |||||||||| ||||||||||| || ||||| Sbjct 26767745 CTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 163 bits (180), Expect = 6e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | ||| || || ||||||||||| || || Sbjct 26767337 ACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 26767396 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||||||||| || ||||||||||| | | ||||||||| || Sbjct 26767397 AAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGG 26767456 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 ||| ||||||||||| |||||||| || || ||| | || || ||||| | |||| || | Sbjct 26767457 AATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCAA 26767515 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 26767516 CCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | || || || |||||||| ||||| || Sbjct 26767793 ACCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGC 26767852 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| ||||| || || || ||||| | ||| |||||||| || Sbjct 26767853 CAAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGG 26767912 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| |||||||| || |||||| | ||||| ||||| || | || || Sbjct 26767913 AATGCCCTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 26767972 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| || || ||||| |||||||| Sbjct 26767973 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCAT 26768020 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | ||| || || |||||||||||||| || Sbjct 26768022 CCACCACGAAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 26768081 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || ||||||||||| |||||||| || || ||||| | |||||| || || ||| Sbjct 26768082 AAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGA 26768141 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | ||||| || || || | || || Sbjct 26768142 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACC 26768201 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| |||||||| || | || |||||||| || ||||| Sbjct 26768202 TCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||||| |||| ||| || || || || || |||||||| ||||| Sbjct 26767110 CCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCC 26767169 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || || || ||||| || |||||||| | || ||||| || Sbjct 26767170 AGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 26767229 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || |||||||||||||||||||| || || ||| |||| || ||||| | |||| || || Sbjct 26767230 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAG-AGCTCTCAAC 26767288 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 26767289 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 >seq1 Length=29149675 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | || || || || | || |||||| |||||||||||||| ||| Sbjct 6811666 CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCA 6811725 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 6811726 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGA 6811785 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || ||||| || || || ||| | ||||| ||||| |||| || || Sbjct 6811786 ATCCCTTCCTTATCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACC 6811845 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||||||||| || ||||| Sbjct 6811846 TCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | || || || || ||||| || |||||| Sbjct 6810623 CCACCACGGAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCA 6810682 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || || || || |||||||||||||| | || ||||| ||| Sbjct 6810683 AGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGA 6810742 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || || |||||||| || | ||||| || || ||| || || Sbjct 6810743 ATTCCCTCCTTGTCCTGAATTTTTGCTTTCACATTGTCGATTGTATCAGAACTCTCCACC 6810802 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||| ||||| |||||||| ||||| ||||| ||||||||| Sbjct 6810803 TCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCATT 6810850 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| ||| || ||||||||||| || || Sbjct 6811209 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 6811268 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | || || ||||| ||||||| | ||| ||||| || Sbjct 6811269 AAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGG 6811328 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || |||||||| || || ||| |||| || || || || | || || Sbjct 6811329 AATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCAC 6811388 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| || || || ||||| Sbjct 6811389 CTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 6811436 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| ||||| || || || | ||| || ||||| |||||||| || || Sbjct 6810851 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCC 6810910 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||||| || || || |||||||||||||| | || ||||| ||| Sbjct 6810911 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 6810970 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || ||| | || || ||||| |||| || || Sbjct 6810971 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 6811030 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | ||| || || || || ||||| Sbjct 6811031 TCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 >seq5 Length=28023477 Score = 163 bits (180), Expect = 6e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || || || || | |||| ||| || || ||||||||||| || || || ||| Sbjct 21960184 AGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGG 21960125 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || ||||| || || || ||||| || |||||||| || ||||| || || || ||| Sbjct 21960124 CCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCC 21960065 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGT 283060 ||||| ||||||||||| || || | ||||| || || || ||| |||||||||||||| Sbjct 21960064 TTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGA-GCTCTCGACTTCGAGAGT 21960006 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| | || || ||||| |||||||| Sbjct 21960005 GATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq2 Length=23174626 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || ||||| | ||| ||| || |||||||||||||| || Sbjct 15735207 ACCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGC 15735266 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| || || || ||||| ||||| | ||| || |||||| ||| Sbjct 15735267 AAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGG 15735326 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || |||||||| || || ||||||| || || ||| ||||| Sbjct 15735327 TATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGAC 15735386 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | || || ||||| |||||||| Sbjct 15735387 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq3 Length=39782674 Score = 147 bits (162), Expect = 5e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || ||||| |||||||| || || Sbjct 4360575 ACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGC 4360634 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| | ||| || || || || || | | ||| |||||| || Sbjct 4360635 CAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGG 4360694 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 |||||||||||||| ||||| || || || ||| |||| || ||||| | |||| || | Sbjct 4360695 GATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTG-AGCTCTCAA 4360753 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || | ||||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 4360754 CCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 4360803 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| || || || | ||| ||||| ||| ||||| ||||| || || || Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||| || || || || || ||||| ||||| | |||||||| ||| Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 ||||||||||| ||||||||||| ||||| || |||| || || || | |||| || || Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAG-AGCTCTCCAC 19995916 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || || || || || || || || || || || ||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| ||| | || ||| || || || ||||||||||| Sbjct 19995867 ACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGC 19995808 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || ||||| || | | ||||||||| || Sbjct 19995807 GAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 19995748 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||||||||| || || || || || | || || || || ||| ||| || Sbjct 19995747 TATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCAC 19995688 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || || || || | ||||| || ||||| ||||| Sbjct 19995687 CTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736651844260