Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 >seq3 Length=39782674 Score = 156 bits (172), Expect = 4e-33 Identities = 306/447 (68%), Gaps = 13/447 (3%) Strand=Plus/Minus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| |||||||||||||||||||| || |||||||| || |||||| || || || | Sbjct 22913419 ACAACAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGA 22913360 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCC--AAAATATTGCAGCAAATGATCC 23618 |||||| ||| |||||||| || |||||||| | || |||||| ||| || | || Sbjct 22913359 ATGTTAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACT--ACC 22913302 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 || |||||||| ||||||||| ||||| |||| || || | |||||| | | Sbjct 22913301 TGAGAAGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGT 22913242 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 || |||||| || | ||||| |||||| || ||||| | || || Sbjct 22913241 GCTGTC---AATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATC 22913185 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAG 23795 ||| || | | | || | || ||| ||||| |||| | || || || || | || Sbjct 22913184 AATAGC--ATGAAACAAGCGATTCTTC-TCATTCGAATCTTTGATGTAAGTTTCGAGGAG 22913128 Query 23796 TAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCT 23855 | ||||||||| || |||||||| || || |||||||| || || || || || ||| Sbjct 22913127 AAGACTATACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCT 22913068 Query 23856 AGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACC 23915 |||||| | |||||| || || | || | || | || || || ||||| Sbjct 22913067 GACTTCAGCGACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACC 22913008 Query 23916 ATCACTAGCAGCAAAGAAAGCAAGAAC 23942 |||| ||||| ||||| ||||| || Sbjct 22913007 ATCAGAGGCAGCGAAGAAGGCAAGGAC 22912981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486761466000