Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq5 140 2e-28 seq6 129 4e-25 seq2 107 1e-18 seq3 105 5e-18 >seq1 Length=29149675 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || ||||| | | || |||||||| ||| ||||||||| ||||||||||| Sbjct 6810847 CATTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATC 6810906 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 6810907 CGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGG 6810966 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | || ||||| | || || Sbjct 6810967 GGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTC 6811026 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 6811027 AACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| ||||| ||||||||||||||||| ||| || | || ||| Sbjct 6811228 ACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCC 6811287 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| ||||||| | ||||| |||| || | ||||||||| ||| Sbjct 6811288 AACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 6811347 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| ||| |||||||| | || || |||||| Sbjct 6811348 ATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTT 6811407 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||| || |||||||||||| Sbjct 6811408 CCGGTAAGAGTCTTGACAAAGATTTGCATG 6811437 Score = 131 bits (144), Expect = 1e-25 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || |||||||| || || || ||||||||||| || || ||||| || | || | Sbjct 6811684 ACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTT--CGGCCATCCT 6811741 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| ||||| |||||||| || |||||||| | || | |||||||| ||| Sbjct 6811742 CAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCT 6811801 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || || | || ||| | |||||||||| || |||||||| | || || ||| Sbjct 6811802 GGAT-TTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 6811860 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||| |||||||||||||| Sbjct 6811861 TTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 Score = 120 bits (132), Expect = 2e-22 Identities = 158/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 || |||||||| || |||||| || ||||| ||||| || || || || | || | Sbjct 6810641 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAG--GGTCCTTCCATCTT 6810698 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||| |||||||||||||| | |||||| |||| || | || ||||| ||| Sbjct 6810699 CCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC- 6810757 Query 44247 TTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | | || ||||| || ||| | || || || | |||||||||| || || | Sbjct 6810758 TGAATTTTTGCTTTCACATTGT--CGATTGTATCAGAACTCTCCACCTCCAAAGTGATGG 6810815 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| | ||||||||||||||| ||||| Sbjct 6810816 TCTTTCCCGTCAAGGTCTTCACGAAGATCTGCAT 6810849 Score = 114 bits (126), Expect = 9e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || ||||| ||||| ||||||||||| || || |||| || Sbjct 6811455 CACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTC 6811514 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || |||||||| || ||||| || | || | |||||||| ||| Sbjct 6811515 AAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTG 6811574 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || ||| | || ||||| | || |||||||| | || || |||| Sbjct 6811575 GATCTT-GGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCT 6811633 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || ||||| || || ||||| |||||| Sbjct 6811634 TTCCGGTAAGGGTTTTTACAAAGATCTGCATG 6811665 >seq5 Length=28023477 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || | | ||| ||||| |||||| ||||| || |||||||| ||||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| || |||| || |||||||| ||||| || |||||||||||||| || | ||| Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | |||||||| ||| ||||| ||| || ||| | ||||| |||| | || | Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGT--CGATGGTATCGGAGCTCTCGA 21960016 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || | || || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 21960015 CTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 21959966 >seq6 Length=29076228 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || ||||||||||| ||||| | | | || || Sbjct 26766900 ACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCA 26766959 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| || |||||||| | |||||| || | ||| | |||||||| ||| Sbjct 26766960 AGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGA 26767019 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || |||| | | || ||||||| | |||||||||| || || |||||| Sbjct 26767020 ATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTT 26767079 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || || |||||||| Sbjct 26767080 CCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| ||||| || ||| |||||| |||||||| ||||| Sbjct 26767562 CATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATC 26767621 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || |||| || || ||||| ||||||||||| | | || || |||| Sbjct 26767622 AGCAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGG 26767681 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | ||||| || | |||||| Sbjct 26767682 GGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTC 26767741 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || || || ||||| |||||||| ||||| |||||||| Sbjct 26767742 GACCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| ||||| || ||| |||||| |||||||||||||| Sbjct 26767334 CATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC 26767393 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || || |||| || || ||||| ||||||||||| | | || || |||| Sbjct 26767394 GGCAAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGG 26767453 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | | | |||||||| | | || Sbjct 26767454 GGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTC 26767513 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || |||||||| || | ||||| || || || ||||| Sbjct 26767514 AACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| ||||| | || | || || Sbjct 26768040 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCG 26768099 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || || ||||| | ||| |||||||| | || | |||||||| ||| Sbjct 26768100 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGG 26768159 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || || || | || || ||||| | || || ||||| Sbjct 26768160 ATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTA 26768219 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || |||||||||||||| Sbjct 26768220 CCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | | ||||| || | || |||||| || |||||||| Sbjct 26767103 TTGCATTCCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTA 26767162 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || || | | || || ||||||||||| || |||||||| | |||||| || Sbjct 26767163 ATCAGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTC 26767222 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| || ||||| ||| | | | |||||||| | | Sbjct 26767223 TGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCT 26767282 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || |||||||| || | ||||| || || || ||||| Sbjct 26767283 CTCAACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 >seq2 Length=23174626 Score = 107 bits (118), Expect = 1e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || || || || || || ||||| ||||| ||||||||||| ||||| ||| || Sbjct 15735217 AGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 15735276 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| ||||| ||||| | ||||||||| || | || | |||||| Sbjct 15735277 CCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCC 15735336 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | | | ||||| || | || ||||| | || Sbjct 15735337 TTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 15735396 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 || ||||| || || || || ||||||||||| ||||| |||| Sbjct 15735397 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATAGTGTG 15735440 >seq3 Length=39782674 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||||||| |||||||||||||| ||| || | || ||| Sbjct 4360594 ACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCC 4360653 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || || || | | ||||| || | ||| | ||| ||||| ||| Sbjct 4360654 AATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 4360713 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || || | || ||| | |||||||| | | || ||||||| || || ||||| Sbjct 4360714 AT-TTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTCTT 4360772 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||||||| || |||||||| Sbjct 4360773 TCCTGTCAAGGTCTTCACAAATATTTGCAT 4360802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||| || ||||| |||||||| || | | || | || ||| Sbjct 19996304 ACAAGGTGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCC 19996245 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || |||||||||| | ||| ||||||| ||| | || || || || Sbjct 19996244 AATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGA 19996185 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | ||| || |||| || || ||||| Sbjct 19996184 ATCTTCGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTC 19996125 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||| || ||||| Sbjct 19996124 CCTGTTAATGTCTTCACGAAAATCTGCAT 19996096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989566397230