Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 129 5e-25 seq5 114 1e-20 seq1 113 4e-20 seq3 84.2 2e-11 >seq6 Length=29076228 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || ||| ||||||||| |||||||| || | Sbjct 26767566 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 26767625 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || ||||| ||||| || || || | |||||||| | |||| Sbjct 26767626 AGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 26767685 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| ||| ||||| || | | || || || || || Sbjct 26767686 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTATCGATGGTATCAGAGGATTCGAC 26767744 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || |||||||||||||| ||||| |||||||| ||||| Sbjct 26767745 CTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||||||||||| Sbjct 26767794 CCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCC 26767853 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||| ||||| || ||||| || || ||||||||||| | ||| Sbjct 26767854 AAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGA 26767913 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| || | || || | ||| | | | ||||| |||||| || Sbjct 26767914 ATGCCCTCTTTGTCC-TGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 26767972 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || |||||||| || || ||||||||||||||| Sbjct 26767973 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || ||| ||||||||| ||||| || |||| Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || ||||| ||||| || || || | |||||||| | |||| Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | |||||||||| ||| || ||| | || | || | |||| |||| || Sbjct 26767458 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TC 26767513 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| |||||| || ||||||||||| Sbjct 26767514 AACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || | | Sbjct 26766882 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 26766941 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | | || || |||||||| || ||||| |||| | ||| ||||||| || Sbjct 26766942 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 26767001 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||| |||| || | | |||||| |||||| Sbjct 26767002 ATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCAC 26767060 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| || ||||| ||||| Sbjct 26767061 CTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 >seq5 Length=28023477 Score = 114 bits (126), Expect = 1e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || |||||| |||||||||||||| ||||||| || || || Sbjct 21960184 AGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGG 21960125 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| |||| ||||| ||||||| || | | ||| Sbjct 21960124 CCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCC 21960065 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 |||||| ||| ||| ||| || | || | || ||| ||| || || | | Sbjct 21960064 TTGTCCTGGATCTTTGCCTTGACATTGTCG--ATGGTATCGGAGCTCTCGACTTCGAGAG 21960007 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || |||||||| || || || ||||| ||||||||| Sbjct 21960006 TGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 21959966 >seq1 Length=29149675 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || || |||||||||||||||||| || | Sbjct 6810622 GCCACCACGGAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGC 6810681 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || |||||||| ||||| || |||| | ||| ||||| | || Sbjct 6810682 AAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGG 6810741 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| ||||||||| || | | | || || ||||| Sbjct 6810742 AATTCCCTCCTTGTCC-TGAATTTTTGCTTTCACATTGTCGATTGTATCAGAACTCTCCA 6810800 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || ||||||| ||||| ||||| |||||||| Sbjct 6810801 CCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCAT 6810849 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || || |||||||| || || || |||| Sbjct 6811437 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGC 6811496 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || || ||||| || ||||| |||| || || ||||||| ||| Sbjct 6811497 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGG 6811556 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCA 41813 | | ||||| ||| ||| || |||| |||| | || |||||| ||||||| Sbjct 6811557 GATTCCTTCCTTATCCTGGATCTTG-GCTTTAACGTTGTCAATAGTGTCAGAAGACTCCA 6811615 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || || ||||| || ||||||||| Sbjct 6811616 CCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCATG 6811665 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||| | || || || | || || || |||||||||||||| Sbjct 6811702 TCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 6811761 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| || || || |||| |||| | ||||| ||| || |||| || | |||| Sbjct 6811762 ATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCC-TGGATTTTAGCCTTAACGTT 6811820 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | |||||| ||||||||||| | || || || || || || || ||||| || Sbjct 6811821 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAAC 6811880 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 6811881 GAAGATTTGCAT 6811892 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| |||||||| ||||| || |||| Sbjct 6811210 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 6811269 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||| |||||||| ||||| | || ||||| | |||| Sbjct 6811270 AGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGA 6811329 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTG---TCGCTCGACTC 41811 | | ||||| ||| ||| || ||| |||| | || || ||| ||||| Sbjct 6811330 ATACCTTCCTTATCCTGGATCTTGGCCTT----GACGTTATCAATGGTATCGGAGGACTC 6811385 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || || || || ||||| || || || |||||| Sbjct 6811386 CACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCATG 6811437 >seq3 Length=39782674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||||| || ||||| | | Sbjct 19995866 CCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCG 19995807 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || || || | ||||||||| | || Sbjct 19995806 AGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGT 19995747 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | | ||||||| | ||| |||| || | || | || | || | || |||| Sbjct 19995746 ATACCTTCCTTGT-CTTGAATTTTAGCCTTGACATTGTCA-ATGGTATCAGAACTTTCCA 19995689 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || ||||| || || || ||||| || || || ||||| Sbjct 19995688 CCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302902028000