Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 seq1 109 7e-19 >seq3 Length=50312079 Score = 174 bits (192), Expect = 2e-38 Identities = 568/873 (65%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || || || || || || || || || |||||||| || || | || || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| ||||||| |||||||| || | | | ||||| | | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || ||||| || ||||||| ||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 | || | ||| || || ||| || ||||| ||||| || | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 24084 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 24140 | || || |||||||| | || | || |||| | ||||| |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| || || |||||||| || || ||| | || || || || || | ||||||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAATTCC 24259 || || || | ||| || |||||||| || | |||| | | ||| || || ||||| || Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCCGAGAAAAAAATCCC 34658936 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGCGCTGTCATGTATCCAC 24317 ||| || ||||| ||||||| || || || ||| | | || ||| |||||| Sbjct 34658935 TTCCACACAAGCAAACGCAATAATCCTCTCCGCA-AACGACTCCCCTC-CATCAATCCAC 34658878 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 | ||||| | ||||||||| | ||||| || || ||||| || || | || | Sbjct 34658877 CTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAAC 34658818 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 || || | ||| |||| ||| | || | ||| | ||||||||| |||||| Sbjct 34658817 CTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAA 34658758 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || || || || || ||||| || || ||| || ||||| | | ||| || Sbjct 34658757 TGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACC 34658698 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || | ||| | | || ||||| || ||| || || ||| || || ||||| Sbjct 34658697 TCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || | ||||| | ||||| | || || || | || | | ||| | | || Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 |||| ||||| ||| ||||| || | ||||| || || ||||| || || || ||||| Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518 Query 24678 TTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | |||||| | | | ||||||||||| || ||| Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| |||| ||| |||| | | |||||||| ||||||| Sbjct 36375076 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACCA 36375017 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| |||||| || || ||||| || ||| | ||||| |||||| || || Sbjct 36375016 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGAC 36374957 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || ||||| ||| Sbjct 36374956 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATATG 36374897 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || || ||||| |||||| |||| || || || |||||| Sbjct 36374896 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 >seq1 Length=51465339 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 |||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| | Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 || |||||||||| |||||| ||||| |||| || || |||||||||||||| | Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 | || | | || || || || | ||| ||| | ||| || || || |||||| Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || |||| || ||| |||||||| |||| || ||| || |||||| Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 |||||||||||||| | ||| || || || || || |||||| | || | | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| |||||| || || | ||| | || |||||| || || || | ||| | Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| || || || ||||| | ||| | || |||| | ||||||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || ||||| || | || ||||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| ||| | | ||||| || ||||| | ||||||| || |||| || Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 54041 ||| ||||| ||||| | ||| |||||| | || | | ||| || | || ||||| Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATAA 14682800 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 | ||||||||||||||||| || ||||| ||||| | || |||||| || Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593685783744480