Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 seq3 127 3e-24 seq2 102 1e-16 seq4 91.5 2e-13 >seq6 Length=36610139 Score = 127 bits (140), Expect = 3e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | |||||| | ||||| || || || ||| | ||| | || ||| Sbjct 34407443 AATGCAGATTTTTGTGAAGACATTGACAGGAAAGACAATTACTTTGGAGGTGGAGAGCTC 34407502 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || |||||||| ||||||||||| || ||||| || | Sbjct 34407503 A-GACACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAAGGCATCCCACCAGACC 34407561 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| |||||||| || || || | |||||| |||| || | | || || | Sbjct 34407562 AGCAGAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACCCTTGCTGACTACA 34407621 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| |||||||| || | || ||||| | ||| | ||||||| || Sbjct 34407622 ATATTCAGAAAGAATCTACCCTCCACTTGGTGCTCCGTCTTAGAGGTGGGAT 34407673 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || ||| | ||| | ||| Sbjct 34641346 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATCACTCTTGAGGTAGAAAGCTCG 34641405 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| ||||||||||| || || ||||| Sbjct 34641406 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 34641465 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| | |||||| |||| || |||| ||||| ||| Sbjct 34641466 CAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGTACCTTAGCTGATTACAAT 34641525 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | ||||||||| | ||| |||| ||||| || Sbjct 34641526 ATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 34641575 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || ||||| | ||| ||||| | Sbjct 34406532 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAGACCATAACCCTTGAGGTTGAAAGCTCT 34406591 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || |||||||| || ||||| || || || ||||| Sbjct 34406592 GACACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAG 34406651 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || ||||| | |||||| | | || |||| || |||||| Sbjct 34406652 CAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAGGACTTTAGCTGACTATAAT 34406711 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | ||||||||| | ||| | || ||||| || Sbjct 34406712 ATTCAGAAGGAATCCACCCTTCATTTGGTTCTTCGTCTCCGCGGTGGCAT 34406761 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | ||||| || || || || ||||| | || ||| Sbjct 34642029 AATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34642088 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| |||| | ||| || |||||||| || || || || ||||| || | Sbjct 34642089 -TGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 34642147 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| ||||||||| | || ||| | || ||| | | ||| || | Sbjct 34642148 AGCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACA 34642207 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||| || || | ||| | || | ||| | || ||||| || Sbjct 34642208 ATATTCAAAAAGAGTCTACCCTTCATCTTGTGCTCCGTCTCCGTGGTGGAAT 34642259 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | ||||| || || || || ||||| | || ||| Sbjct 34079581 AATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34079640 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| |||| | ||| || |||||||| ||||| || || ||||| || | Sbjct 34079641 C-GACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAAGAGGGCATCCCACCAGACC 34079699 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| ||||||||| | || ||| | || ||| | | ||| || | Sbjct 34079700 AGCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACA 34079759 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||| || || | ||| | || | ||| | || || || || Sbjct 34079760 ATATTCAAAAAGAGTCTACCCTCCATCTTGTGCTCCGTCTCCGTGGGGGGAT 34079811 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || ||||| || |||| ||||| | Sbjct 34406988 ATGCAGATTTTTGTTAAGACCCTTACTGGAAAGACTATTACCTTAGAAGTTGAAAGCTCT 34407047 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| || ||||| ||||| || ||||| ||||| || || Sbjct 34407048 GACACTATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAG 34407107 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || || || | || || | || || | | || ||||| Sbjct 34407108 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGACGGCCGTACTCTTGCTGACTATAAC 34407167 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | || | || |||||||| Sbjct 34407168 ATCCAGAAGGAGTCAACCCTTCATTTGGTGCTCCGCCTGCGTGGTGGTAT 34407217 >seq3 Length=50312079 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | || | ||| | Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| |||||||||||| || || || || || || || || Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 6143843 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||| || || ||||| |||||| || | ||||| | ||||| || Sbjct 6143844 CAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTACAAC 6143903 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | ||| |||| || | || ||||||| || Sbjct 6143904 ATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGGCAT 6143953 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || || ||||| || | ||| |||| ||| | Sbjct 6143952 ATGCAGATATTTGTGAAGACTCTGACTGGGAAGACTATCACACTTGAGGTTGAGAGCTCA 6144011 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| || || ||||| || ||||| || || Sbjct 6144012 -GACACCATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCA 6144070 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| ||||| || | |||||| | || ||| | | || || || Sbjct 6144071 GCAGAGGCTTATATTTGCTGGAAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAA 6144130 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || || | ||| |||| | ||| | || || || || Sbjct 6144131 TATTCAAAAGGAGTCTACCCTTCATCTGGTGCTTCGTCTGCGTGGAGGGAT 6144181 >seq2 Length=43913520 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || ||||| |||||||| ||||| | || || | Sbjct 39748490 ATGCAGATTTTCGTGAAGACTCTGACCGGCAAGACTATAACCCTAGAGGTGGAGAGTTCA 39748549 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || ||| || || || || ||||| || || || ||||| Sbjct 39748550 -GATACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 39748608 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| ||||| ||| | |||||| || | || | | |||||||| Sbjct 39748609 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTAGGACTCTGGCTGATTATAA 39748668 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| || || || || || | || ||||| || ||| | || ||||| Sbjct 39748669 TATCCAGAAGGAGTCCACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 39748716 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| | ||||| || ||||| || | ||| |||| ||| Sbjct 39747578 ATGCAGATTTTCGTCAAGACCTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGCTCG 39747637 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| || || || ||||| ||||| || ||||| || || Sbjct 39747638 -GATACTATTGACAATGTGAAAGCTAAGATCCAGGATAAGGAAGGGATCCCACCAGACCA 39747696 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | ||||| | |||| ||| ||||| || Sbjct 39747697 GCAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGAAGAACCCTAGCTGATTACAA 39747756 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| | ||| |||| | ||| | || || || || Sbjct 39747757 CATTCAGAAAGAATCAACACTCCATCTGGTCCTCCGTCTCCGTGGAGGGAT 39747807 >seq4 Length=35924511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAATG 124599 |||||| |||||||||||||| | || || | || || | || | | ||| | | Sbjct 33631348 GCAAATTTTTATAAAGACACTTGCTGGGAAGATGATCACACTTAAGGTAAAGAGCTCA-G 33631290 Query 124600 ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAAC 124659 |||| ||| |||| | || || ||||| || || || || | | | || |||| | Sbjct 33631289 ATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGAGATCTCCAAATCAGC 33631230 Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719 |||||||||||||||| || || || || |||||| | |||| || | ||| ||||||| Sbjct 33631229 AAAGGCTTATTTTTGCTGGGAAGCAGTTGGAGGATGGAAGAACTTTGGCAGACTATAATA 33631170 Query 124720 TTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || || || || ||| | || | || | ||| | || |||||| Sbjct 33631169 TCCAGAAGGAGTCTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGT 33631123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755410427116800