Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 seq6 105 1e-17 seq3 96.9 5e-15 seq2 89.7 8e-13 >seq4 Length=35924511 Score = 127 bits (140), Expect = 3e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||| ||| || | |||||| || | || || ||||| || || |||||| Sbjct 27885337 GTTCCTCCTCGAAGCCTAAGTACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCT 27885278 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| |||||||| ||||||||||||||||| || |||||||| ||| Sbjct 27885277 GCAAGAGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGA 27885218 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| || Sbjct 27885217 GGAATACCTTCCTTATCCTG 27885198 >seq6 Length=36610139 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || || | ||||||||| | || ||||| || ||||| ||||| | Sbjct 34407444 TTCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAG 34407385 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | ||| || || || || |||||||||||||| || ||||| ||||| | Sbjct 34407384 CCAATGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGG 34407325 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| ||||| |||||||||| Sbjct 34407324 GGATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCTA 34407265 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || |||||||| || ||||| | || || | || |||||||| Sbjct 34407264 CTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 102 bits (112), Expect = 1e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| || || || ||||||||||| | || ||||| ||| || || || |||||| Sbjct 34642030 TTCCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGA-ATGTTGTAATCT 34641972 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || || | || || || || || |||||||| ||||| || |||||||| ||| Sbjct 34641971 GCCAATGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGA 34641912 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| ||||| Sbjct 34641911 GGAATTCCCTCTTTGTCTTG 34641892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || || ||||||||||| | ||| ||||| || || || ||||||| Sbjct 34079582 TTCCACCCCTCAGCCTCAATACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTG 34079523 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | || || || || || |||||||| ||||| || |||||||| |||| Sbjct 34079522 CCAAGGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAG 34079463 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| || || ||||| Sbjct 34079462 GAATTCCCTCCTTGTCTTG 34079444 >seq3 Length=50312079 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || ||||||| ||| | ||| ||||| ||| || || || ||||| | Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGC 6143892 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || | ||| || ||||| || |||||||||||||| || ||||| || || || Sbjct 6143891 CAATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 6143832 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 |||||| || || ||||| ||||| ||||||||||| Sbjct 6143831 AATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTAC 6143772 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || || || || || || | || |||| || |||||||| Sbjct 6143771 TTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq2 Length=43913520 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||||| || | ||| || | ||| ||||||||||| ||||| || Sbjct 39748671 ATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTC 39748612 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || || || Sbjct 39748611 TGCTGATCTGGAGGAATTCCTTCCTTGTCCTG 39748580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743481546769920