Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 140 2e-28 seq1 129 4e-25 seq2 122 6e-23 seq6 93.3 3e-14 >seq7 Length=36358036 Score = 140 bits (154), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 14364775 CCGCCGCGGAGGCGGAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 14364716 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || | | |||| || | ||||||||| ||||| ||||| ||||||||||| | |||| Sbjct 14364715 AGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 14364656 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| ||||| ||||| | || | | || | |||| ||||| | Sbjct 14364655 -ATGCCTTCTTTGTCTTGAATCTTG-GCTTTGACATTGTCGATTGTGTCGGAGGATTCCA 14364598 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| ||||| |||||||||||||| |||||||| |||||||||||| Sbjct 14364597 CCTCCAGGGTGATAGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATC 14364548 >seq1 Length=51465339 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| ||| ||||| ||||||||||||| Sbjct 30446227 CCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCT 30446286 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| || | ||| || || ||||| ||||| || ||||||||| || Sbjct 30446287 AGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCGGGAGGG 30446346 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| || ||| ||||| | || | | || | |||| ||||| || Sbjct 30446347 ATGCCTTCTTTGTCTTGGAT-TTTGGCTTTGACATTGTCGATGGTGTCGGAGGATTCCAC 30446405 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||||||||| ||||| || ||||||||||| Sbjct 30446406 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTTACGAAGATCTGCAT 30446453 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||||| || | | |||| || | |||||||| ||||| Sbjct 45560523 TCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAG 45560464 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || | || ||||||||| ||| | || ||||| || || ||||| ||| | | Sbjct 45560463 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC--CTGGATTTTGGCCTTGACGT 45560406 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | |||| |||||| || | |||||||| || |||||||| ||||||| Sbjct 45560405 TGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCA 45560346 Query 34377 CAAAGATCTGCATC 34390 ||||||| |||||| Sbjct 45560345 CAAAGATTTGCATC 45560332 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | ||| || ||||| ||||||||||||| Sbjct 45560787 CCACCACGGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCA 45560728 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || || | |||||| || || || || | || ||||||||| ||| Sbjct 45560727 AGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 45560668 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | |||| || | ||||| Sbjct 45560667 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTCTCGACT 45560608 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || | ||| || || ||||||||||| Sbjct 45560607 TCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATCTGCAT 45560561 >seq2 Length=43913520 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 31249803 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 31249744 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 31249743 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 31249684 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | | || | || | || ||||| Sbjct 31249683 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 31249624 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || |||||||| ||||||||||| Sbjct 31249623 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 31249577 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| | | | || || | |||||| || |||||| Sbjct 39747312 TCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAA 39747253 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || ||||| || || | || |||||||| ||||| ||||| || Sbjct 39747252 ATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG-GCTTT-GAC-- 39747197 Query 34319 GCTATCGAATCGGTC-GA---TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 | | |||| | ||| || ||| || |||| |||||||| || ||||| |||||||| Sbjct 39747196 GTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTT 39747137 Query 34375 CACAAAGATCTGCATC 34390 |||||||||||||||| Sbjct 39747136 CACAAAGATCTGCATC 39747121 >seq6 Length=36610139 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | || || |||| |||| ||||||||| || || Sbjct 34641765 TTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAA 34641706 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 |||||| | ||||||||| ||| | || ||||||||| ||| || ||||| | || Sbjct 34641705 AATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATC-TTAGCTTTAACAT 34641647 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | ||| || || | |||||||| || || || || || || | Sbjct 34641646 TATCAATAGTGTCAGAGCTTTCAACTTCTAGGGTGATGGTCTTTCCAGTAAGTGTCTTAA 34641587 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 34641586 CAAAGATCTGCAT 34641574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||| |||| || | ||| ||| ||||| |||||||| || | Sbjct 34079581 TCCACCCCTCAGCCTCAATACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTGC 34079522 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | |||| ||||||||||| || || || || | || |||||| || || Sbjct 34079521 CAAGGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGG 34079462 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | || | | |||| ||||| || || Sbjct 34079461 AATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTGTCGATCGTATCGGAGCTCTCTAC 34079402 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || || || || || || || |||||||| ||||| Sbjct 34079401 TTCCAAGGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 34079354 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||||||||| |||| || | || ||| ||||| || ||||| || | Sbjct 34407443 TCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAGC 34407384 Query 34222 CAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || || | || || |||||||||||||| || ||||| | || ||||||||| || Sbjct 34407383 CAA-TGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGG 34407325 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||||| || ||| ||| | || | | || | ||| | ||| | Sbjct 34407324 GGATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCTA 34407265 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || || || ||||| || || |||||||| ||||| Sbjct 34407264 CTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323052997914560