Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 >seq3 Length=50312079 Score = 98.7 bits (108), Expect = 9e-16 Identities = 550/868 (63%), Gaps = 23/868 (3%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 ||| || ||| || ||||| || | ||||| ||| ||||||||||| || || || | Sbjct 34659364 CATCACAGACGCCTTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTG 34659305 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT-- 16048 || ||||| ||||| ||||||| ||||| | | ||| || | || ||| Sbjct 34659304 CAACGAAATCAACTCCATCCAATCAAATGGATTCT--GCACATTATACATCTTCCCATAC 34659247 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| || |||||||||||||| | |||||||| |||| ||||| | Sbjct 34659246 CCCAACGCTCCCAACAACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCA 34659187 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || | || | || | || || | ||| | | || || | |||| Sbjct 34659186 TTCATCCCAACCAAAGCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACC 34659127 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT----AAGTGTTT 16224 || || | || | |||| | || | | | | || || || | Sbjct 34659126 GCATCCGCTACAATCCC-CTTAACCCGCTCCTCACTCG---GCTTCATCCTCAACAAATC 34659071 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 | ||| ||||| |||||||||||||||| || || ||||| || | ||| || || Sbjct 34659070 ATACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGA 34659011 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 || || | || ||||| || || | || || | |||||| || ||| || || Sbjct 34659010 GAAAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCC 34658951 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA--CGTTCTA 16402 || || || || ||||| || ||||| |||| |||| ||| ||| | || || Sbjct 34658950 CGAGAAAAAAATCCCTTCCACACAAGCAAACGCAAT-AATC-CTCTCCGCAAACGA-CTC 34658894 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | | || ||||| | | ||||| || || || | | ||||| || || Sbjct 34658893 CCCT--CCATCAATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTC 34658836 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || || | || || || || | ||| ||||||| | || | | Sbjct 34658835 TCAATCGCCCTGAACAACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAAC 34658776 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 ||||||||||| || |||||||||||||| || || |||||||| |||||||| || Sbjct 34658775 AAACTATACATCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTC 34658716 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 || || | | || || || |||||| | || || || ||| || || ||| Sbjct 34658715 GCCTCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCA 34658656 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGAAA 16700 || ||| || ||||| || || | || ||||||| | || || | | | ||| Sbjct 34658655 TCAGAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAA 34658596 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 | || ||||| | | ||||| ||||||||||| || || | ||||| ||||| | Sbjct 34658595 GCTT--CCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGG 34658538 Query 16761 CAACAGCCTTTTTATACATTTTCCATAT 16788 | | || || || ||||| | ||| || Sbjct 34658537 CCTCGGCTTTCTTGTACATCTCCCAGAT 34658510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462484098963600