Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq6 82.4 6e-11 >seq1 Length=51465339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || |||||||||||||| || || ||||||||| Sbjct 41028772 CAGTTCTATGTAGCCAATGGCGAGTTATCTTGTCAAATGTATCAGCGCTCTGCTGATATG 41028831 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || |||||||| ||||| |||||| ||||| || | || | |||||||| ||| Sbjct 41028832 GGTCTCGGTGTTCCATTCAACATTGCATCATATGCACTTTTGACATGCATGATTGCTCAT 41028891 Query 20551 GTT 20553 ||| Sbjct 41028892 GTT 41028894 >seq6 Length=36610139 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || ||||| ||||| || || || ||||||||| Sbjct 2879935 CAGTTCTATGTAGCAAATGGCGAGTTATCTTGTCAGATGTACCAGCGCTCTGCTGATATG 2879994 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || || || || |||||||||||| |||||||| | || | |||||||| ||| Sbjct 2879995 GGTCTTGGCGTGCCATTCAATATTGCATCCTATGCGCTTTTAACATGCATGATTGCTCAT 2880054 Query 20551 GTT 20553 ||| Sbjct 2880055 GTT 2880057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399160521244570