Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq4 95.1 9e-15 >seq6 Length=36610139 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| ||||| || ||||| || ||||| ||||| || || Sbjct 34406986 CCACCACGTAGACGAAGAACCAGATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCT 34406927 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||||||||||| ||||||| || || ||||| || Sbjct 34406926 AATGTACGACCATCCTCAAGCTGTTTGCCCGCGAAGATAAGCCTCTGCTGATCAGGAGGA 34406867 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | ||| || | ||| |||||| | || | Sbjct 34406866 ATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACT 34406807 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| | ||||| || | |||||| ||||| || ||||| Sbjct 34406806 TCTAAGGTAATGGTCTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 34406760 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || ||||||||||| |||||||| || | ||| | |||||| | |||| Sbjct 34642232 TGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTCAAGTTGT 34642173 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | ||||| || || || || || | ||| ||||| || ||| | | Sbjct 34642172 TTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCT-T 34642114 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| ||||| | ||| ||||||| | ||| || | |||||| | || || || Sbjct 34642113 TGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGT 34642054 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 ||| || || ||||| || |||||| Sbjct 34642053 CAAAGTCTTCACAAAGATCTGCATT 34642029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||||| || ||||| || ||||| || ||||| || Sbjct 34406758 CCACCGCGGAGACGAAGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGCT 34406699 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| || | |||||||||||| ||||||| || || ||||| || Sbjct 34406698 AAAGTCCTTCCATCCTCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGAGGG 34406639 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | |||||| | | | |||||| | || Sbjct 34406638 ATGCCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACC 34406579 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| | || ||||| | ||||| ||||| || ||||| Sbjct 34406578 TCAAGGGTTATGGTCTTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 >seq4 Length=35924511 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || |||||||||| |||||| ||||| ||||| ||||||||||| || || Sbjct 27885335 TCCTCCTCGAAGCCTAAGTACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 27885276 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| ||||| || || ||| | || | || || ||||| || Sbjct 27885275 AAGAGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGAGG 27885216 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 27885215 AATACCTTCCTTATC 27885201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379321688171370