Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 194 2e-44 seq1 95.1 2e-14 >seq3 Length=50312079 Score = 194 bits (214), Expect = 2e-44 Identities = 570/872 (65%), Gaps = 10/872 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || || || || || |||||||| || || | ||| || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| ||||| || || || | | ||||| | | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || ||||| || || || | ||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | || | ||| || || ||| || ||||| ||||||| | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 33531 AATCTAACGGTTTCTTCACTCGG-TGGATGT--AATAAATGTTTAAACATCAAACATGCG 33587 |||| || |||||||| | || || |||| | ||||| |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| || ||||||||||| || || ||| | || || || || || | ||||||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || || || | ||| || |||||||| || | ||| || || || || || ||| Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCT 34658935 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCATGTATCCACT 33765 || || |||||| ||||||| ||||| || ||| | | || ||| |||||| Sbjct 34658934 TCCACACAAGCAAACGCAATAATCCTCTCCGCA-AACGACTCCCCTC-CATCAATCCACC 34658877 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | ||||| | ||||||||| | ||||| || ||||| || || || | || | Sbjct 34658876 TCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAACC 34658817 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 || || | ||| |||| |||| | || | ||| | ||||||||| ||||||| Sbjct 34658816 TCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAAT 34658757 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 |||| || || || || |||||||| || || ||| || ||||| | | |||||| | Sbjct 34658756 GAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACCT 34658697 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 | | ||| | | || ||||| || ||| || |||||| || || ||||| | Sbjct 34658696 CCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAAG 34658637 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 | | ||||| | ||||| | || || || | || | | ||| | | ||| Sbjct 34658636 CGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTAT 34658577 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||| ||||| ||| ||||| || | ||||| || || ||||| || || || ||||| | Sbjct 34658576 CTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATCT 34658517 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||||| | | | ||||| |||||||| ||| Sbjct 34658516 CCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||||||||| || | ||| || || || || || |||||| || || | ||||| Sbjct 36403900 GTTCCCGCATTGAAAAGGGTTGGTGACGCATGAGTGAACCATCGTTGGGACATTAGATGA 36403841 Query 63723 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || |||| |||||| || || ||||| | ||| ||||| || || || || | ||| | Sbjct 36403840 TATGTCTTAATAGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAG 36403782 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| || || || || ||||||| || | | || || | |||||| | || | Sbjct 36403781 CATATGTTGTGGCCTCTCAACAACCTTCCCTTGCACCTTTAAAAGGTAGGACCTCTCAAG 36403722 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||| ||||| || | || ||||||||| || || || || Sbjct 36403721 GGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATATATTAT 36403674 >seq1 Length=51465339 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 |||||||||||||| | ||| || || || || || |||||| | || | | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||| ||||| || || | ||| | || |||||| || || || | ||| | Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| || || || ||||||| || | || ||||| | ||||||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| || | || ||||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 |||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| | Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 || || || ||| ||||||| || || |||| | || |||||||||||||| | Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63596 | || | | ||||| || || | ||| ||| | ||| || || || || ||| Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166 Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || |||| ||| || ||||||| |||| || ||| || |||||| Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 |||||||| ||| | | ||||| |||||||| | ||||||| || |||| | Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 63279 ||| ||||| ||||| | ||| |||||| | || | | ||| || | || ||||| Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATAA 14682800 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 | ||||||||||||||||| || ||||| ||||| | || |||||| || Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629779606253280