Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 >seq3 Length=50312079 Score = 131 bits (144), Expect = 2e-25 Identities = 561/875 (64%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||| ||||| || | |||||| || || ||||||||||| || | | || || | Sbjct 34659352 CTTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAA 34659293 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| ||||| | ||||| | | || || | || ||| || || Sbjct 34659292 CTCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAA 34659233 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || ||||| || || || | ||||||||| ||| ||| | |||||| || | | Sbjct 34659232 CAACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAA 34659173 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | | ||| | |||| | | ||||||| | || || | ||||||||| | || Sbjct 34659172 AGCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAAT 34659113 Query 11578 CGACGTTATAACTTCCTTAGATGG-TGGATGT--AATAAATGTTTAAACATTAAACACGC 11634 | | | | |||| | || | || || |||| | ||||| ||| || Sbjct 34659112 CCCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGC 34659056 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| | ||| || || || || || ||||| || || || |||||||| Sbjct 34659055 AAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGG 34658996 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA-GAAAAGAATATTC 11753 ||| | || | || || | |||||| || || ||| | | || || || || || | Sbjct 34658995 CATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCCGAGAAAAAAATCC 34658937 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT--ATCCA 11811 | |||||| ||||| || | || || | |||| | || || || ||||| Sbjct 34658936 CTTCCACACAAGCAAACGCAA-TAATCCT-CTCCGCAAACGACTCCCCTCCATCAATCCA 34658879 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | | ||||| | || ||||| | || || || || || || || | || || Sbjct 34658878 CCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAA 34658819 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 | || || ||| | | ||| | || | || ||||||||||| || || Sbjct 34658818 CCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGA 34658759 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||||||||| || || || || ||||| ||||| ||| | ||||| | ||| || Sbjct 34658758 ATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCAC 34658699 Query 11992 ATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 ||| ||| ||| || | || |||||||| ||||| |||||| || || |||| Sbjct 34658698 CTCCTTCAT-AAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAA 34658640 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTA 12110 | || || | ||| | ||||||| || || || ||| || ||||| | | | Sbjct 34658639 AAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACAT 34658580 Query 12111 AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACA 12170 ||||| |||||||| ||||| || ||||||| ||| ||| | | || || |||| Sbjct 34658579 TATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACA 34658520 Query 12171 TTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | | |||||| | | | || | ||| ||||| ||| Sbjct 34658519 TCTCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 |||| || |||| || ||| | | | |||| ||| | | | | ||| || || |||| Sbjct 36375078 CACCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATAC 36375019 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||| ||| | || ||| | || |||||| |||| |||| || |||||| | | Sbjct 36375018 CATTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAG 36374959 Query 38291 ACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAAT 38349 ||| || ||||| || || || |||| | || | ||| || | || || || ||| || Sbjct 36374958 ACACACCGATTCCTCCAGC-TGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATAT 36374900 Query 38350 ATACCTTCTATACTGTCATCCTTTAT 38375 || ||||| |||||||||||||| || Sbjct 36374899 ATGCCTTCAATACTGTCATCCTTCAT 36374874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468496536241440