Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3 215 7e-51
seq1 109 8e-19
>seq3
Length=50312079
Score = 215 bits (238), Expect = 7e-51
Identities = 577/873 (66%), Gaps = 12/873 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| || || || || || || || || || |||||||| || || | ||| || ||
Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||| ||||| |||||||| || || | | ||||| | | |
Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|| |||||||| ||||| | ||||| |||||| || | |||||| || | |
Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| || | ||| || || ||| || ||||| |||||||| | || |||
Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112
Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 49965
|||| || |||||||| | || | || |||| | ||||| ||||||
Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055
Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025
||||| || ||||||||||| || || ||| || || || || || || | |||||||
Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995
Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAAGATTCC 50084
|| || || | ||| || |||||||| || | |||| | | ||| || || || || ||
Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCCGAGAAAAAAATCCC 34658936
Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCTGTCATGTATCCAC 50142
||| || ||||| |||| || ||||| || | ||| | || ||| ||||||
Sbjct 34658935 TTCCACACAAGCAAACGCAATAATCCTCTCCGCAAACGACTCCC-CTC-CATCAATCCAC 34658878
Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202
| ||||| | ||||||||| | ||||| || ||||| || || || | || |
Sbjct 34658877 CTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAAC 34658818
Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262
|| || | ||| |||| |||| | || | ||| | ||||||||| ||||||
Sbjct 34658817 CTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAA 34658758
Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322
||||| || || || || |||||||| || || ||| || ||||| | | ||||||
Sbjct 34658757 TGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACC 34658698
Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382
|| | ||| | | || ||||| || ||| || || ||| || || |||||
Sbjct 34658697 TCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638
Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442
|| | ||||| | ||||| || || || | | || | | ||| | | ||
Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578
Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502
|||| ||||| ||| ||||| || | ||||| || || ||||| || || || |||||
Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518
Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATA 50535
| |||||| | | | ||||| |||||||| |||
Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| || ||||| | || | ||| |||| ||| |||| | | |||||||| |||||||
Sbjct 36375076 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACCA 36375017
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|||||||||||||| || || ||||| || ||| | ||||| |||||| || ||
Sbjct 36375016 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGAC 36374957
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| || || ||| ||| | || || || || || ||||| |||
Sbjct 36374956 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATATG 36374897
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || || || ||||| |||| || || || ||||||
Sbjct 36374896 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| || ||||| | || | ||| |||| ||| |||| | | |||||||| ||| |||
Sbjct 36404322 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATGCCA 36404263
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|||||||||||||| || || ||||| || ||| ||||||| |||||| || ||
Sbjct 36404262 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTGGCACGGATATTATGAAGAGAC 36404203
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| || || ||| ||| | || || || || || ||||| |||
Sbjct 36404202 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAAAGTGTCATATATG 36404143
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || || || ||||| |||| || || || ||||||
Sbjct 36404142 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36404101
Score = 89.7 bits (98), Expect = 7e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||||||||| || | ||| || || || || || |||||| || |||| |||||
Sbjct 36403900 GTTCCCGCATTGAAAAGGGTTGGTGACGCATGAGTGAACCATCGTTGGGACATTAGATGA 36403841
Query 80395 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| |||| |||||| || || ||||| | ||| ||||| || || || || | ||| |
Sbjct 36403840 TATGTCTTAATAGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAG 36403782
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
||| || || || || ||||| | ||| | | || || | ||| || | || |
Sbjct 36403781 CATATGTTGTGGCCTCTCAACAACCTTCCCTTGCACCTTTAAAAGGTAGGACCTCTCAAG 36403722
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||||| ||||| || | || ||||||||| || || || ||
Sbjct 36403721 GGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATATATTAT 36403674
>seq1
Length=51465339
Score = 109 bits (120), Expect = 8e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| |
Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||||||||||||||| ||||| |||| || || |||||||||||||| |
Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
| || | | ||||| || || | ||| ||| | ||| || || || ||||||
Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| |||| || || ||||||| |||| || ||| || ||||||
Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|||||||||||||| | ||| || || || || || |||||| | |||| | || |
Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| |||| ||||| ||||| | ||| | || |||||| || || || | ||| |
Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||| || || || ||||| | ||| | || ||||| | ||| ||| | ||||
Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||| || ||||| || | || ||||||||| || ||||| ||
Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754
Score = 89.7 bits (98), Expect = 7e-13
Identities = 124/172 (72%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893
|||||||| ||||| | ||| | |||||||| | ||||||| ||| | || ||
Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858
Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951
||| ||| | ||||| | ||| |||||| | |||| | |||| || | || |||||
Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATAA 14682800
Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003
| ||||||||||||||||| || ||||| ||||| | || ||| || ||
Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718225470434640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |