Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=51465339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| ||| |||||| || | |||||| |||| Sbjct 45560559 CCACCACGAAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCA 45560500 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | ||| ||||| || || ||||| | ||| || || | || Sbjct 45560499 AGGGTCCTGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 45560440 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | ||||| || || ||| | ||||| || | | ||||||| ||| | |||| Sbjct 45560439 ATGCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGG-AGCTTTCGAC 45560381 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || ||||||||||| |||||||| Sbjct 45560380 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 45560333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381347169031908