Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 201 2e-46 seq1 109 7e-19 >seq3 Length=50312079 Score = 201 bits (222), Expect = 2e-46 Identities = 574/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || || || || || ||||||||||| || | ||| || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| |||||||| || || | | ||||| | | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || ||||| || | || | ||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | || | ||| || || ||| || ||||| ||||| || | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 42014 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 42070 | || || |||||||| | || | || |||| | ||||| |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| || |||||||||||||| || ||| | || || || || || | ||||||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAAGAAGATTCC 42189 || || || | ||| || |||||||| || | |||| | | ||| || || || || || Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCCGAGAAAAAAATCCC 34658936 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCACTGTCATGTATCCAC 42247 ||| || ||||| ||||||| ||||| || ||| | | || ||| |||||| Sbjct 34658935 TTCCACACAAGCAAACGCAATAATCCTCTCCGCA-AACGACTCCCCTC-CATCAATCCAC 34658878 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 | ||||| | ||||||||| | ||||| || ||||| || || || | || | Sbjct 34658877 CTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAAC 34658818 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 || || | ||| |||| ||| | || | ||| | ||||||||| || ||| Sbjct 34658817 CTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAA 34658758 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 ||||| || || || || |||||||| || || ||| || ||||| | ||||| || Sbjct 34658757 TGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACC 34658698 Query 42428 TCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 || | ||| | | || ||||| ||| ||| || || ||| || || ||||| Sbjct 34658697 TCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA 42547 || | ||||| | ||||| | || || || | || || | ||| | | || Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 |||| ||||| ||| ||||| || | ||||| || || || || || || || ||||| Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | |||||| | | | |||||||||||||| ||| Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| |||| ||| |||| | | |||||||| ||||||| Sbjct 36375076 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACCA 36375017 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| |||||| || || ||||| || ||| | ||||| ||||| || || Sbjct 36375016 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGAC 36374957 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || || ||| ||| | || || || || || ||||| ||| Sbjct 36374956 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATATG 36374897 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || ||||| |||||| |||| || || || |||||| Sbjct 36374896 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||||||||| || | ||| || || || || || |||||| || |||| ||||| Sbjct 36403900 GTTCCCGCATTGAAAAGGGTTGGTGACGCATGAGTGAACCATCGTTGGGACATTAGATGA 36403841 Query 72478 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| |||||| || || ||||| | ||| || || || || || || | ||| | Sbjct 36403840 TATGTCTTAATAGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAG 36403782 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 |||||| || || || ||||| | ||| | | || || | |||||| | || | Sbjct 36403781 CATATGTTGTGGCCTCTCAACAACCTTCCCTTGCACCTTTAAAAGGTAGGACCTCTCAAG 36403722 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||| ||||| || | || ||||||||| || || || || Sbjct 36403721 GGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATATATTAT 36403674 >seq1 Length=51465339 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| | Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291 || |||||||||| |||||| ||||| |||| || || ||||||||||||| | Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226 Query 72292 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351 | || | | ||||| || || | ||| ||| | ||| || || || |||||| Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166 Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || |||| || ||| |||||||| |||| || ||| || |||||| Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 |||||||||||||| | ||| || || || || || |||||| | |||| | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||| ||||| ||||| | ||| | || ||||| || || || | ||| | Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || || || || ||||| | ||| | || ||||| | ||||||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || ||||| || | || ||||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||||||| ||||| | ||| | |||||||| | ||||||| || | || || Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||| |||||| ||||| | ||| |||||| | |||| | ||| | || |||||| Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCATTGCTTTGTACCCTTTCCATAAAT 14682798 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||||||||||||||| || ||||| ||||| | || ||| || || Sbjct 14682797 AGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098713527760