Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 129 4e-25 seq6 111 1e-19 seq2 105 5e-18 seq1 100 2e-16 seq15 82.4 6e-11 >seq3 Length=50312079 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| || || || | |||||| ||||| || ||||| ||||||||||| Sbjct 6143952 TGCCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAG 6143893 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | || | || || ||||| || ||||| | ||||| | || ||||| | Sbjct 6143892 CCAATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 6143833 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||||| || ||||| |||||| ||| || ||| | || || ||||| | ||||| Sbjct 6143832 GAATTCCCTCCTTGTCTTGAATTTTCGCT-TTCACATTGTCAATTGTATCAGAACTTTCT 6143774 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||| || || || || ||||| || ||||| |||||||| Sbjct 6143773 ACTTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq6 Length=36610139 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| || || || |||||||| ||||| || ||||| ||||||||||| Sbjct 34642028 CCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCC 34641969 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || |||| || || || || ||||| ||||||| | || || || ||| Sbjct 34641968 AATGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGGA 34641909 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| |||||||| || ||||| ||| ||| | || || ||||| | ||||| Sbjct 34641908 ATTCCCTCTTTGTCTTGGATCTTTGC-CTTAACATTGTCAATTGTATCAGAGCTCTCTAC 34641850 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || || || || || || ||||| |||||||| Sbjct 34641849 CTCCAAGGTAATTGTCTTTCCAGTAAGCGTCTTGACAAAGATTTGCAT 34641802 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| |||| || || || |||||||| ||||| || || || ||||||||||| || Sbjct 34079580 CCACCCCTCAGCCTCAATACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTGCC 34079521 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | || |||| || || || || ||||| ||||||| | || || || || Sbjct 34079520 AAG-GTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGG 34079462 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||| || ||||| || ||||| ||| ||| | || || |||||| | |||| Sbjct 34079461 AATTCCCTCCTTGTCTTGGATCTTTGC-CTTAACATTGTCGATCGTATCGGAGCTCTCTA 34079403 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || || || || || || || || ||||| |||||||| Sbjct 34079402 CTTCCAAGGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 34079354 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| || || |||| | || || || || Sbjct 34642460 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTTCTTCCATCCTCCAACTGC 34642401 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| ||||| || ||| ||||| |||||||| ||||| Sbjct 34642400 TTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTC 34642341 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || ||||| ||||| || || ||| Sbjct 34642340 GCCTTCACATTATCAATTGTATCTGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 34642281 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 34642280 AATGTCTTCACAAAGATTTGCAT 34642258 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || || |||| | || || || || Sbjct 34080012 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTTCTTCCATCCTCCAACTGC 34079953 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| ||||| || ||| ||||| |||||||| ||||| Sbjct 34079952 TTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTC 34079893 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || ||||| | || || || ||||| ||||| || || ||| Sbjct 34079892 GCCTTCACGTTATCAATTGTATCTGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCGGTC 34079833 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 34079832 AATGTCTTCACAAAGATTTGCAT 34079810 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCG--CGTC 15210 ||| | |||||||||||| || || || || |||||||| ||| ||| || | || Sbjct 34406969 AACCAGATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCT---AATGTACGACCATC 34406913 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 || | |||||||| ||| | || | | || || || ||||| ||||| ||||| Sbjct 34406912 CTCAAGCTGTTTGCCCGCGAAGATAAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 34406853 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| ||| | || ||||| || |||| || |||||||||||||| Sbjct 34406852 CTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACTTCTAAGGTAATGGT 34406793 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| || ||||| Sbjct 34406792 CTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 34406760 >seq2 Length=43913520 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || || || || |||||||| ||| || | || |||| Sbjct 39748245 AACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGTCC 39748186 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || || |||||| | ||||| | |||||||| ||||||||||| ||||| Sbjct 39748185 TCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCT 39748126 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | || |||||||| | | || || || | |||||| || Sbjct 39748125 TGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACTCTCAACTTCAAGGGTAATAGTC 39748066 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||| || || |||||||| |||||| Sbjct 39748065 TTTCCTGTCAAGGTCTTGACAAAAATCTGCATA 39748033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || || || || || ||||| ||| | || | || Sbjct 39748701 AAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCC 39748642 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || ||||| | ||||| | || || || ||||||||||| ||||| Sbjct 39748641 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 39748582 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| ||| | || |||||||| | | || || |||| ||| || || Sbjct 39748581 TGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTC 39748522 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || ||||| |||||| Sbjct 39748521 TTGCCGGTCAGAGTCTTCACGAAAATCTGCATA 39748489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || |||||||| || ||| | || | ||||| | || Sbjct 39747325 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCGAGCTG 39747266 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | || | |||||| || || ||||| ||||| ||||| || || Sbjct 39747265 CTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 39747206 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || || | || || || || | |||| || || ||||| ||||| || || || Sbjct 39747205 GGCTTTGACGTTGTCGATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGT 39747146 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| || ||||| Sbjct 39747145 CAGAGTTTTCACAAAGATCTGCAT 39747122 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || ||||| || |||||||| || ||| | || | || || Sbjct 39748015 AACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTC 39747956 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || |||||| | ||||| | || ||||| ||||||||||| ||||| Sbjct 39747955 CAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 39747896 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || || ||||| | || || || | |||||| || | Sbjct 39747895 GATCTTAGCT-TTCACATTGTCAATCGTATCCGAGCTCTCAACCTCCAGGGTAATAGTCT 39747837 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||||| || || |||||||| ||||| Sbjct 39747836 TGCCTGTCAAGGTCTTGACAAAAATCTGCAT 39747806 >seq1 Length=51465339 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || |||||||| ||| ||| |||| |||| || | ||| Sbjct 30446251 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGT 30446310 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | ||||| |||||| || || ||||||||||| |||||| Sbjct 30446311 TTTCCGGCGAAGATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTG 30446370 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| ||| ||| || || | ||| |||||||| || || Sbjct 30446371 GCTTTGACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGGTG 30446430 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || ||||| Sbjct 30446431 AGGGTTTTTACGAAGATCTGCAT 30446453 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| ||| | || ||||||| ||||| Sbjct 45561447 TGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCTGCCGTCTTCCAATTGC 45561388 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| || || || ||| |||||||| ||||| ||| || Sbjct 45561387 TTTCCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTA 45561328 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | || || || | ||||| || || || ||| Sbjct 45561327 GCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCGGTC 45561268 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || ||||| || |||||| Sbjct 45561267 AAGGTCTTGACAAAGATCTGCATA 45561244 >seq15 Length=668940 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| || || || ||||||||||| || | || |||| || ||||| || ||| Sbjct 334887 GTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTCCTGCCGTCCTCCAATTGCTTACCA 334828 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||||||| || ||||| ||||| ||||| ||||| || || ||| Sbjct 334827 GCAAAGATCAAACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTAGCCTTC 334768 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || |||||||| | || || || | ||||| || || ||||||| || Sbjct 334767 ACGTTGTCAATGGTATCTGAGCTCTCAACTTCGAGAGTAATAGTCTTCCCTGTCAAGGTC 334708 Query 15347 TTTACAAAAATTTGCATA 15364 || ||||| || |||||| Sbjct 334707 TTGACAAAGATCTGCATA 334690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157897751266