Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq6 96.9 3e-15 >seq3 Length=50312079 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| || |||| || | || || ||||||||||| |||||||| ||| Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 6143891 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||||| || ||||| ||| |||| | |||||||| || ||| Sbjct 6143890 AATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 6143831 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||||| ||| || | | | | ||||| | || | Sbjct 6143830 ATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTACT 6143771 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || || || || | ||| || ||||| |||||||| Sbjct 6143770 TCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| || | ||||||||||||||||||||||| || ||| Sbjct 6144178 CCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCC 6144119 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||||||||| || || ||| | ||||| |||||||| || || Sbjct 6144118 AGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGG 6144059 Query 18935 ACGCCCTCTTTGTC 18948 | ||| || ||||| Sbjct 6144058 ATGCCTTCCTTGTC 6144045 >seq6 Length=36610139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| |||||||||||||| || || | ||| | | || || || ||||| || Sbjct 34079778 GTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTCAAGTTGTTTTCCA 34079719 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| |||||||| || || | |||||||||||| ||| || ||| Sbjct 34079718 GCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCTTTG 34079659 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||| ||| |||| || | || ||||| || ||||| ||||| Sbjct 34079658 ACATTATCAATAGTGTCGGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGTCAAAGTC 34079599 Query 19025 TTGACAAAAATTTGCATT 19042 || |||||||| |||||| Sbjct 34079598 TTCACAAAAATCTGCATT 34079581 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | || ||| || |||| || | || || ||||||||||| |||||||| | Sbjct 34642030 TTCCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTG 34641971 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | ||||||||| ||| || || ||| | || | ||||||||||| | Sbjct 34641970 CCAATGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAG 34641911 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||||||||||| || || || || | | | | |||| ||| |||| Sbjct 34641910 GAATTCCCTCTTTGTCTTGGATCTTTGCCTTAACATTGTCAATTGTAT---CAGAGCTCT 34641854 Query 18992 GT--TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || | |||||| || || || || | || |||||||| |||||||| Sbjct 34641853 CTACCTCCAAGGTAATTGTCTTTCCAGTAAGCGTCTTGACAAAGATTTGCAT 34641802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | || ||| | |||| || | || || ||||| |||||||||||||| | Sbjct 34407444 TTCCACCCCTCAGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAG 34407385 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | | ||||||| ||| || || ||| |||| | |||||||| ||| || Sbjct 34407384 CCAATGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGG 34407325 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| ||||| || || | | | | ||||| | || Sbjct 34407324 GGATTCCTTCCTTGTCTTGGATTTTTGCCTTCACATTGTCAATTGTATCCGAACTTTCTA 34407265 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| || || || ||||| | || |||||||| |||||||| Sbjct 34407264 CTTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | || ||| || |||| || | || || ||||| ||||| |||||||| | Sbjct 34079582 TTCCACCCCTCAGCCTCAATACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTG 34079523 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||||||| ||| || || ||| | || | ||||||||||| | Sbjct 34079522 CCAAGGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAG 34079463 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || || || | | ||| |||||| ||| Sbjct 34079462 GAATTCCCTCCTTGTCTTGGATCTTTGCCTTAACATTGTCGATCGTATCGGAGCTCTCTA 34079403 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| || || || || || | || |||||||| ||||||||| Sbjct 34079402 CTTCCAAGGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 34079353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| |||||||||||||| || || | ||| | | || || || ||||| || Sbjct 34642226 GTAGACTCTTTTTGAATATTGTAGTCTGCAAGTGTGCGGCCATCTTCAAGTTGTTTTCCA 34642167 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| |||||||| || || | |||||| ||||| ||| || ||| Sbjct 34642166 GCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGCTTTG 34642107 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||| || |||| || | || ||||| || ||||| ||||| Sbjct 34642106 ACATTATCAATAGTGTCAGAGCTCTCCACCTCTAGCGTGATGGTCTTTCCTGTCAAAGTC 34642047 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 34642046 TTCACAAAGATCTGCATT 34642029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414548416123444