Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq3 87.8 1e-12 >seq6 Length=36610139 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGT 43970 ||| | ||| || || ||||||||||||||| || || | || || || |||| | Sbjct 34079791 CACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTC-TGCAAGTGTGCGGCCATCTT 34079733 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | ||||||||| |||||||| | || |||||||| | || | || ||||| ||| Sbjct 34079732 CAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTT 34079673 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| ||| |||||| || ||| ||| || | |||||| || | ||| || || | Sbjct 34079672 GAATCTTTGCTTTGACATTATCAATAGTGTCGGAGCTCTCCACCTCTAGCGTGATGGTCT 34079613 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || |||||||||||||| || ||||| Sbjct 34079612 TTCCTGTCAAAGTCTTCACAAAAATCTGCAT 34079582 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGT 43970 ||| | ||| || || ||||||||||||||| || || | || || || |||| | Sbjct 34642239 CACAAGATGAAGGGTAGACTCTTTTTGAATATTGTAGTC-TGCAAGTGTGCGGCCATCTT 34642181 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | ||||||||| |||||||| | || |||||||| | || | || || || ||| Sbjct 34642180 CAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTT 34642121 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| ||| |||||| || ||| ||| || | |||||| || | ||| || || | Sbjct 34642120 GAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCTAGCGTGATGGTCT 34642061 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || |||||||||||||| || ||||| Sbjct 34642060 TTCCTGTCAAAGTCTTCACAAAGATCTGCAT 34642030 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || |||| || || |||||||| || ||| || |||||||| || ||||| Sbjct 34642028 CCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCC 34641969 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | | || ||||| || || || ||||||||||||| ||||| || |||| Sbjct 34641968 AATGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGGA 34641909 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| || ||| || || | ||| ||||| | ||| || Sbjct 34641908 ATTCCCTCTTTGTCTTGGATCTTTGCCTTAACATTGTCAATTGTATCAGAGCTCTCTACC 34641849 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||| || || || | ||||| ||||| ||||||||| Sbjct 34641848 TCCAAGGTAATTGTCTTTCCAGTAAGCGTCTTGACAAAGATTTGCATG 34641801 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||||| |||||||| || || | ||| |||| || Sbjct 34407653 CACCAAGTGGAGGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTACGACCATCCTC 34407594 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| |||| || |||||||| | || | ||||||||||| Sbjct 34407593 AAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCTTTATCCTG 34407534 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| || || || ||| || |||| |||||| || | |||||||| || Sbjct 34407533 AATTTTTGCCTTCACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGTAATTGTCTT 34407474 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||||||||| || ||||| Sbjct 34407473 TCCTGTCAATGTCTTCACAAAAATCTGCAT 34407444 >seq3 Length=50312079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| ||| || || ||| ||||||||||| || ||| | | || |||| || Sbjct 6144161 CACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGCCAGTGTGCGGCCATCCTC 6144102 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || ||||| |||||||| | || |||||||| | || | ||||| || || Sbjct 6144101 CAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTG 6144042 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||| ||| || || ||| || |||| ||| || || | || || || || Sbjct 6144041 AATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACCTCAAGTGTGATAGTCTT 6143982 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||||||||||||||| |||||| Sbjct 6143981 CCCAGTCAGAGTCTTCACAAATATCTGCATG 6143951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354756733090248