Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq4 89.7 4e-13 seq2 84.2 2e-11 >seq3 Length=50312079 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| |||||||| |||| ||| || || ||||| ||||| ||||||||||| || Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 6143891 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || || ||| |||||||| || || ||| |||| | |||||| || || ||| Sbjct 6143890 AATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 6143831 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| |||||| |||||| | | ||| | ||| | ||| | Sbjct 6143830 ATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTACT 6143771 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||| || || || || | || || ||||| |||||||| Sbjct 6143770 TCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq4 Length=35924511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| |||||| |||||||||| | ||| | ||||| || || || || ||||| || || Sbjct 27885347 TTTGATCATTGTTCCTCCTCGAAGCCTAAGTACCAAGTGAAGGGTTGACTCTTTCTGAAT 27885288 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | |||| | |||||| ||||| || || ||| |||| | |||||| Sbjct 27885287 GTTGTAATCTGCAAGAGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATCAACCTCTG 27885228 Query 20089 TTGATC 20094 ||||| Sbjct 27885227 CTGATC 27885222 >seq2 Length=43913520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| ||| ||||| || ||||| || |||||||| || | | ||| | ||| ||| Sbjct 39748014 ACCAGATGGAGTGTTGACTCTTTCTGAATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCC 39747955 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| || || || | || | |||||| || || ||| | ||||| ||||| Sbjct 39747954 AGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 39747895 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 || || |||||| | | ||| | ||| | || | || |||| |||||| || || Sbjct 39747894 ATCTTAGCTTTCACATTGTCAATCGTATC-CGAGCTCTCAACCTCCAGGGTAATAGTCTT 39747836 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| || ||||||||||| ||||| Sbjct 39747835 GCCTGTCAAGGTCTTGACAAAAATCTGCAT 39747806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419562521192106