Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 141 8e-29 >seq3 Length=50312079 Score = 141 bits (156), Expect = 8e-29 Identities = 372/563 (66%), Gaps = 5/563 (1%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| |||||||||||||||||| |||| || ||||| || || ||||| || || | Sbjct 34659068 ACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGA 34659009 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | || | || ||||||||||| | || || | |||||| || || ||| || ||| Sbjct 34659008 AAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCGC-GCAGAAGCTCCCC 34658950 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || ||||| || |||||||| || | ||| || || ||| ||| Sbjct 34658949 GAGAAAAAAATCCCTTCCACACAAGCAAACGCAATAATCCTCTCCGCAAACG-ACTCCCC 34658891 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | | || |||||| | | ||||| || || || | | || || || | || Sbjct 34658890 T--CCATCAATCCACCTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCA 34658833 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || || | || || || |||| || ||||||| | || | ||| || Sbjct 34658832 ATCGCCCTGAACAACCTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAA 34658773 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 |||||||| || ||||||||||| || ||||| || || || ||||||||| || ||| Sbjct 34658772 CTATACATCTCCGAATGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCC 34658713 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | ||||| || || ||| || | || || || ||| || || || ||| Sbjct 34658712 TCCGCCACCTGCACCTCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCA 34658653 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621 ||| || |||||||| || | || ||||||| | || || | | ||| | Sbjct 34658652 GAAGCGGCGAAAAAAGCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCT 34658593 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 ||| | | ||||| |||||||| || ||||| ||||||| ||||| || | Sbjct 34658592 TCCCAGTGAACATTATCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCG 34658533 Query 13682 GCCTTCTTATACATCATCCATAT 13704 || ||||| |||||| ||| || Sbjct 34658532 GCTTTCTTGTACATCTCCCAGAT 34658510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430957050962052