Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq3 95.1 1e-14 seq6 86.0 5e-12 >seq2 Length=43913520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 31249779 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAGCTGC 31249720 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||| |||||| || || Sbjct 31249719 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTG 31249660 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||||| || ||||| || ||||| Sbjct 31249659 GCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGTT 31249600 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || |||||||| Sbjct 31249599 AGGGTTTTCACGAAGATCTGCAT 31249577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 ||| |||||| |||||| || |||||||| ||||||| | | || | || || |||| Sbjct 39747325 ATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGC-CATCTTCGAGCT 39747267 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 ||||||| || |||| | ||| |||||||| || | | |||||||||| || | Sbjct 39747266 GCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCT 39747207 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | |||| | | || || || || | | ||| ||| | || ||||| || || Sbjct 39747206 TGGCTTTGACGTTGTCG--ATTGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCC 39747149 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| |||||||||||||| ||||||||| Sbjct 39747148 GGTCAGAGTTTTCACAAAGATCTGCATC 39747121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGT 48572 || || || ||||| ||| |||||| || || || |||||||||| ||| || | | Sbjct 39748701 AAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGA-GTC-CTACCAT 39748644 Query 48573 CCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGT 48632 |||| || ||||| || | | || || | ||||||||| || | | |||||||| Sbjct 39748643 CCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCCTTGT 39748584 Query 48633 CCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||| ||| | | | |||||||| | | |||| ||| | ||||| | Sbjct 39748583 CCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAG 39748524 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||| ||||| ||||||||||| Sbjct 39748523 TCTTGCCGGTCAGAGTCTTCACGAAAATCTGCAT 39748490 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || |||||| ||||||||||||||||| || || | ||||| Sbjct 6143248 ACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCGTCCATCCTCT 6143189 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | | || | | ||||||||| || | || ||||||||| | Sbjct 6143188 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA 6143129 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| |||| | | || || || | | || ||||| || || || || Sbjct 6143128 ATCTTCGCTTTGACATTGTCAATAGTGTCCGAACTTTCAACCTCGAGGGTGATTGTCTTG 6143069 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||||||||| ||||||||| Sbjct 6143068 CCAGTAAGAGTTTTCACAAATATCTGCATC 6143039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| || || | |||||| ||| |||||||||||||||||||||||| Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 6143891 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || |||| || | ||||||| |||||||| | |||| || | |||||| || | Sbjct 6143890 AA-TGTC-CTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGG 6143833 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||| ||||||| || | | | || ||||| | | || Sbjct 6143832 GAATTCCCTCCTTGTCTTGAATTTTCGCTTTCACATTGTCAATTGTATCAGAACTTTCTA 6143773 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || |||||||| || ||||| || ||||| Sbjct 6143772 CTTCAAGGGTAATCGTCTTCCCAGTGAGAGTCTTAACAAAGATTTGCAT 6143724 >seq6 Length=36610139 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| ||| ||||| ||||| ||||||||||| || || | ||||| Sbjct 34079106 ACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCTAAGGTGCGACCATCCTCA 34079047 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| | | || | | ||||||||| || | || ||||||||| | Sbjct 34079046 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCTTGA 34078987 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| || | || ||| | || ||||| || Sbjct 34078986 ATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTTTCTACCTCAAGAGTGATGGTCTTC 34078927 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| ||||| |||||||| ||||||||| Sbjct 34078926 CCGGTAAGAGTCTTCACAAAGATCTGCATC 34078897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| || || |||||||||||| |||||||||||||||||||| ||| Sbjct 34642028 CCACCCCTCAGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCC 34641969 Query 48560 AATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612 || |||| | ||||||||| |||||| || | | || || | ||||||||| Sbjct 34641968 AA-TGTCCTTCCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATC 34641916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226423320826