Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq4507 125 4e-24 >seq4507 Length=1168 Score = 125 bits (138), Expect = 4e-24 Identities = 282/410 (69%), Gaps = 14/410 (3%) Strand=Plus/Minus Query 8226 CATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGAT 8285 |||| || || ||||| |||||||| || || | |||||||||||| ||||||||||||| Sbjct 618 CATCCACGCCGATGTGCGCCTTCATCCCGAAATACCACTGATTGCCCTTCTTGGTCTGAT 559 Query 8286 GCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGG 8345 ||||||| || ||||| | || ||||||||||| ||||| ||| | || | | Sbjct 558 GCATCTCAGGGTCGCGCGCGTTGTCGGCATTCTTGGTCGAACTGGGCGCCGCGATCAGCG 499 Query 8346 TGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTT-CG-GCCAGCCAGCG-AT 8402 | |||||||| | ||||| || | ||| ||| || ||||| ||| | Sbjct 498 TCGCATCGACGATCGTGCCCGACCGCAGGCTCTGGCC--CTTGCGCGCCAG-ATGCGCGT 442 Query 8403 TGATGGTCTTGAACAATTGGCG-GGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTC 8461 ||| | ||| | || ||| ||| || ||| |||||||||| | || || || Sbjct 441 TGACCG-CTTCCAGCATCCGCGCGGCAAGGCCATGGGTCTCCAGCAGGCGCCGAAAGTTG 383 Query 8462 ATGATGGTGGTGCGGTCCGGCAAG--GCGCTATCCAGGGATAACCGGGCAAACAGACGCA 8519 | || ||||| |||||| | | | | | ||| | | | |||||||| | |||| Sbjct 382 AGAATCGTGGTCTCGTCCGGAACGTTGTCCAAGCCACCG--AGCTGGGCAAACCGCCGCA 325 Query 8520 TGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCT 8579 || | ||| |||| ||| || ||||||||||| ||||||||| ||||| |||| Sbjct 324 AGGTCGGGATCTCGTGCAGTGCTTCTTCCATCGCCGGATCGCTCAGCGCATACCACTGCT 265 Query 8580 GCATGCAG-TGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCC 8628 ||| |||| ||||| || | ||| || |||| | || || |||| || Sbjct 264 GCA-GCAGATGAATCCGCAACATCGTCGCCAGTGCGTACGGCTGCCGACC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303217364653146