Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6 109 3e-19 seq3 104 1e-17 seq5 102 4e-17 seq1 102 4e-17 seq8 100 1e-16 seq4 98.7 5e-16 >seq6 Length=36610139 Score = 109 bits (120), Expect = 3e-19 Identities = 95/115 (83%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 22325221 TTAAGAAAAACGGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 22325162 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCT 11553 |||||||||| |||| |||||||||| |||| | | | |||||| |||||||| Sbjct 22325161 ACGACGCTCTAACCAGCTGAGCTAATAGGCCAT-GTC--TTGTGA-ATTTCATCT 22325111 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || ||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1310549 AAAAATAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1310607 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1310608 GACGCTCTAACCAGCTGAGCTAATAGGCC 1310636 >seq3 Length=50312079 Score = 104 bits (114), Expect = 1e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37987874 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37987933 Query 11512 CAACTGAGCTAATGGGCCG 11530 || |||||||||| ||||| Sbjct 37987934 CAGCTGAGCTAATAGGCCG 37987952 >seq5 Length=41956025 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37244952 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37245011 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37245012 CAGCTGAGCTAATAGGCC 37245029 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 4780563 AAAAATTAAAACTCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 4780504 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| || |||| |||||||||| |||| Sbjct 4780503 ACGCGCTAACCAGCTGAGCTAATAGGCC 4780476 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11446 AAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| ||| |||||||| ||||| |||||||||||| |||| Sbjct 37245268 AAAATCGGAAAATGGCCCATGCAAGACTCGAACCTGAGACCTACGCGTTATTAGCTCGAC 37245327 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 37245328 GCTCTAACCAGCTGAGCTAATAGGCC 37245353 >seq1 Length=51465339 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 24844891 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 24844950 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 24844951 CTGAGCTAATAGGCC 24844965 Score = 102 bits (112), Expect = 4e-17 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 24845046 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 24845105 Query 11512 CAACTGAGCTAAT 11524 || |||||||||| Sbjct 24845106 CAGCTGAGCTAAT 24845118 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 42124741 AAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 42124800 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 42124801 CAGCTGAGCTAATAGGCC 42124818 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 46332797 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 46332856 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 46332857 TGAGCTAATAGGCC 46332870 >seq8 Length=31745509 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 21232884 AATGAAAAAGAGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21232942 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 21232943 GACGCTCTAACCAGCTGAGCTAATAGGCC 21232971 Score = 89.7 bits (98), Expect = 3e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11472 CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| |||||||||||||||||||| |||||||| |||| |||||||||| |||||| Sbjct 21234541 CGAACCTGCGACCTTCGCGTTATTAGCATGACGCTCTAACCAGCTGAGCTAATAGGCCGT 21234600 Query 11532 CGACGA 11537 | ||| Sbjct 21234601 TGTCGA 21234606 >seq4 Length=35924511 Score = 98.7 bits (108), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| |||||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 28176594 AATAAAAAAGG---TTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 28176538 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 28176537 GACGCTCTAACCAGCTGAGCTAATAGGCC 28176509 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475819904776