Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 150 3e-32 seq5 141 1e-29 seq8 118 2e-22 seq2 104 4e-18 >seq4 Length=35924511 Score = 150 bits (166), Expect = 3e-32 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | || |||| | || || || || |||||||| || |||||||||||||| || Sbjct 19594803 GCCAAGAGGCACCGCAAGGTC-CTGCGTGACAACATCCAGGGTATCACCAAGCCAGCCAT 19594745 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||||||||| ||||||||||| || || | |||| || |||| Sbjct 19594744 TCGGCGTCTGGCTCGTCGTGGCGGAGTCAAGCGAATCAGCGGCCTCATCTACGAGGAGAC 19594685 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||||||||||| | ||| || || |||||| || ||||| || Sbjct 19594684 TCGAGGTGTGTTGAAGATCTTCTTGGAGAATGTGATTAGAGATGCTGTCACGTATACTGA 19594625 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || | | ||||| || ||| | |||||| | || ||||| ||||| | || || Sbjct 19594624 GCATGCGCGAAGGAAGACGGTTACCGCTATGGATGTTGTGTATGCGTTGAAGAGGCAGGG 19594565 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||||| ||||| |||| Sbjct 19594564 CAGGACTCTTTATGGATTTGGGGGTTA 19594538 Score = 104 bits (114), Expect = 4e-18 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | || || || |||||||| || |||||||| || || || Sbjct 9891102 GCCAAGAGGCACCGCAAAGTGCTCCGTGACAACATCCAGGGGATCACCAAACCCGCCATT 9891161 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||||| | ||||| |||||||| | ||||||| | ||||| |||| Sbjct 9891162 CGGAGATTGGCTCGAAGAGGTGGTGTCAAGCGAATAAGTGGATTGATTTATGAGGAGACC 9891221 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || |||||||||| | ||| || || | ||||| | ||||| ||| Sbjct 9891222 AGAGGCGTGCTGAAGATCTTTTTGGAGAATGTGATTCGCGATGCGGTGACTTATACGGAG 9891281 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||||||||| | |||||| | || |||||| | || | || ||| Sbjct 9891282 CATGCCAGGAGGAAGACTGTCACGGCTATGGATGTTGTTTATGCACTTAAGAGGCAGGGC 9891341 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||||| ||| | ||| Sbjct 9891342 AGGACTCTTTATGGTTTCGGAGGCTAA 9891368 Score = 98.7 bits (108), Expect = 2e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||||||||| ||||| ||||| ||||||| | ||||| | Sbjct 17937721 GAGACAACATCCAGGGGATCACCAAGCCTGCTATTCGTCGATTGGCTCGGAGAGGTGGTG 17937780 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || ||| ||| | || || |||| ||| | ||| | |||||||| ||| Sbjct 17937781 TTAAGCGAATCAGTGGCTTGATTTACGAGGAGACTCGGGGGGTTCTCAAGATCTTTCTCG 17937840 Query 16578 AGACCGTTATCCATGATGC 16596 ||| || || | |||||| Sbjct 17937841 AGAATGTCATTCGTGATGC 17937859 >seq5 Length=41956025 Score = 141 bits (156), Expect = 1e-29 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | |||| | || ||||||| Sbjct 24520062 GAGACAACATCCAGGGAATCACCAAGCCTGCGATTCGAAGATTGGCGAGACGAGGTGGAG 24520003 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||||| || ||| | ||||||| |||| |||| ||| | |||||||| ||| Sbjct 24520002 TCAAGCGAATCAGTGGCCTCATCTATGAGGAGACACGTGGCGTTCTCAAGATCTTTCTCG 24519943 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | |||||| |||||||| | | |||||||| || Sbjct 24519942 AGAATGTGATTCGTGATGCGGTTACCTATACTGAGCACGCGAGGAGAAAGACTGTAACGG 24519883 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| ||||| | || || | | | |||||||||||| ||| Sbjct 24519882 CGATGGATGTTGTGTATGCTTTGAAGAGGCAGGGAAGGACTCTGTATGGTTTTGGAGGTT 24519823 Query 16698 AATCTT 16703 || ||| Sbjct 24519822 AAGCTT 24519817 Score = 122 bits (134), Expect = 1e-23 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | || || || |||||||| |||||||||||||| |||||| Sbjct 34186057 GCCAAGAGGCATCGAAAAGTCCTCCGTGACAACATCCAGGGAATCACCAAGCCTGCTATC 34186116 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||||| | || || || |||||| | |||| || | ||||| |||| Sbjct 34186117 CGAAGATTGGCTCGAAGAGGCGGCGTGAAGCGTATAAGTGGACTGATTTATGAGGAGACA 34186176 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||| || | ||| || || | |||||| | || |||||| Sbjct 34186177 AGAGGAGTTTTGAAGATATTTTTGGAGAATGTGATTCGTGATGCGGTTACTTACACCGAG 34186236 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | ||||| ||||| | |||||| | || ||||| | || | || ||| Sbjct 34186237 CACGCTAGGAGGAAGACGGTCACTGCTATGGATGTTGTGTATGCTCTCAAGAGGCAGGGC 34186296 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||||| || ||||| Sbjct 34186297 AGGACTCTTTATGGTTTCGGTGGTTAA 34186323 Score = 114 bits (126), Expect = 2e-21 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | || ||||| |||||||| || ||||||||||| ||||| Sbjct 33936544 GCCAAACGACATCGTAAAGTCCTCCGAGACAACATCCAGGGTATCACCAAGCCTGCTATT 33936603 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | |||| | | ||||| || |||||| | |||| || |||||||||| | | Sbjct 33936604 CGAAGATTGGCAAGAAGAGGTGGTGTGAAGCGTATAAGTGGACTGATCTATGAAGAAACT 33936663 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||||| || | ||| || || | |||||| || || |||||| Sbjct 33936664 CGTGGGGTTCTCAAGATATTTTTGGAGAATGTGATTCGTGATGCGGTCACTTACACCGAG 33936723 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | ||||| || || ||||||| | || ||||| | || | ||||| Sbjct 33936724 CACGCCAGGAGGAAGACGGTGACTGCCATGGACGTTGTGTATGCTCTCAAGAGGCAAGGA 33936783 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||||||||| || |||| Sbjct 33936784 AGGACCCTTTATGGTTTCGGTGGTTA 33936809 >seq8 Length=31745509 Score = 118 bits (130), Expect = 2e-22 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || || || |||||||| || ||||||||||| || || Sbjct 20860674 GCCAAGCGACATCGAAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCATT 20860615 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || |||||| | || ||| | ||||||| |||| Sbjct 20860614 CGCCGTCTGGCTCGCCGTGGCGGTGTCAAGAGAATCAGTGGGCTCATCTATGAGGAGACC 20860555 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||||||||| | ||| || || | |||||| | || || ||| Sbjct 20860554 AGAGGTGTATTGAAGATCTTTTTGGAGAATGTGATTCGTGATGCGGTTACTTACACTGAG 20860495 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | |||||||| || | |||||| | || ||||| | || | || ||| Sbjct 20860494 CACGCCAGGAGGAAGACTGTGACTGCTATGGATGTTGTGTATGCTCTCAAGAGGCAGGGC 20860435 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | | ||||||| || || Sbjct 20860434 AGGACTCTTTATGGCTTCGG 20860415 Score = 113 bits (124), Expect = 7e-21 Identities = 190/274 (69%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || || || |||||||| || ||||||||||| || || Sbjct 20901500 GCCAAGCGACATCGCAAAGTCCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATT 20901441 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| || || || || ||| | || || | ||||||| |||| Sbjct 20901440 CGTCGTCTGGCTCGCCGAGGCGGTGTAAAGAGAATCAGCGGGCTCATCTATGAGGAGACC 20901381 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||||||||| | ||| || || | |||||| | || || ||| Sbjct 20901380 AGAGGCGTCTTGAAGATCTTTTTGGAGAATGTGATTCGTGATGCGGTTACTTACACTGAG 20901321 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | |||||||| || | |||||| | || || || | || | || ||| Sbjct 20901320 CACGCTAGGAGGAAGACTGTGACTGCTATGGATGTTGTGTACGCTCTCAAGAGGCAGGGC 20901261 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 | | ||||||| || || ||| || ||||| Sbjct 20901260 AGGACTCTTTATGGCTTCGGCGGTTGAT-TTCTA 20901228 >seq2 Length=43913520 Score = 104 bits (114), Expect = 4e-18 Identities = 171/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| |||| |||||||| || ||||||||||| ||||| || ||||| || | | || Sbjct 20663253 CTTAGAGACAACATCCAGGGCATCACCAAGCCTGCTATTCGACGTCTTGCCAGAAGAGGC 20663194 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | | || || | | || ||||||| ||| | ||| | ||||||||| Sbjct 20663193 GGTGTCAAGAGGATTTCAGGTCTCATTTACGAAGAGACTCGCGGTGTGCTCAAGATCTTC 20663134 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || ||||||||||||| | ||||| || Sbjct 20663133 TTGGAGAATGTGATTCGTGATGCGGTGACTTACACCGAGCACGCTAGGAGGAAGACGGTG 20663074 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| | || | || ||| | | |||| || || || Sbjct 20663073 ACTGCTATGGATGTGGTTTATGCTCTCAAGAGGCAGGGCAGGACTCTTTACGGATTCGGG 20663014 Query 16694 AGTTAAT 16700 |||||| Sbjct 20663013 GGTTAAT 20663007 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||| |||||||| || ||||||||||| ||||| || | || || | | || Sbjct 20589802 CTTCGAGACAACATCCAGGGCATCACCAAGCCTGCTATTCGAAGACTTGCCAGAAGAGGC 20589861 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | | || || | | || ||||||| ||| | ||| | ||||||||| Sbjct 20589862 GGTGTTAAGAGGATTTCAGGTCTCATTTACGAAGAGACTCGCGGTGTGCTCAAGATCTTC 20589921 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || ||||||||||| | | ||||| ||| Sbjct 20589922 TTGGAGAATGTGATTCGTGATGCGGTTACTTACACCGAGCACGCCAGGAGGAAGACGGTC 20589981 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | |||||||| |||| | || ||| | | ||||||| || || Sbjct 20589982 ACTGCTATGGATGTGGTCTATGCTCTGAAGAGGCAGGGCAGGACTCTTTATGGATTCGG 20590040 Score = 95.1 bits (104), Expect = 2e-15 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||| |||||||| || ||||||||||| ||||| || | || || | | || Sbjct 20671665 CTTCGAGACAACATCCAGGGCATCACCAAGCCTGCTATTCGAAGACTTGCCAGAAGAGGC 20671606 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | | || || | | || ||||||| ||| | || | ||||||||| Sbjct 20671605 GGTGTCAAGAGGATTTCAGGTCTCATTTACGAAGAGACTCGCGGAGTGCTCAAGATCTTC 20671546 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || || ||||| |||| | ||||| ||| Sbjct 20671545 TTGGAGAATGTGATTCGTGATGCGGTTACTTACACGGAGCATGCTAGGAGGAAGACGGTC 20671486 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| | || | || ||| | | ||||||| ||||| Sbjct 20671485 ACTGCAATGGATGTTGTTTATGCTCTCAAGAGGCAGGGCAGGACCCTTTATGGATTTGGT 20671426 Query 16694 AGTTA 16698 |||| Sbjct 20671425 GGTTA 20671421 Score = 87.8 bits (96), Expect = 3e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| |||| |||||||| || ||||||||||| ||||| || | || || | | || Sbjct 20636879 CTTAGAGACAACATCCAGGGCATCACCAAGCCTGCTATTCGAAGACTCGCCAGAAGAGGC 20636820 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | | || || | | |||||||||| ||| | || | ||||||||| Sbjct 20636819 GGTGTCAAGAGGATTTCAGGTCTCATTTATGAAGAGACTCGCGGAGTGCTCAAGATCTTC 20636760 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||||| | || || |||||||||| | ||||| || Sbjct 20636759 TTGGAGAATGTGATTCGTGATGCGGTGACTTACACGGAGCACGCTAGGAGGAAGACGGTG 20636700 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 20636699 ACTGCTATGGATGTGGTGTATGC 20636677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070787554418