Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq4825 592 5e-165 seq6 360 6e-95 seq8 293 7e-75 seq36 159 1e-34 seq4 140 9e-29 seq1 116 1e-21 >seq4825 Length=155848 Score = 592 bits (656), Expect = 5e-165 Identities = 731/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1218 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| ||||||| || || || || Sbjct 1217 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1158 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || || |||||| Sbjct 1157 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAAT 1098 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| ||||||||||||| ||| Sbjct 1097 ATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATC 1038 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| |||||||||||||| ||||| ||| || | | || Sbjct 1037 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATTAATCGTT 978 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| ||| ||| | ||||||| || || | | Sbjct 977 CTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGT 918 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 |||| ||| |||| ||||| || |||||| |||| || | |||| ||| |||| Sbjct 917 CTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 858 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| | || ||||| || ||| ||||||||||||||| || || Sbjct 857 GT-TTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 799 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 798 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 739 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | || || ||||| |||||||| || || || || ||||||||| || Sbjct 738 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 679 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 |||||| || || | |||| |||||| || || ||| ||| || | || Sbjct 678 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 619 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | |||||||||||| ||||| || |||||||| || || || || || || ||||| Sbjct 618 TTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 559 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 |||| || || ||||||||| |||||| || |||||||||||||| ||||| || || Sbjct 558 CCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGC 499 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| |||| | | || ||| |||||||||||||||| Sbjct 498 TGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAA 439 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| || ||||||||| ||||| || |||| | Sbjct 438 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGCCGTGTAATTAATA 380 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | |||||||||||||| || |||| Sbjct 379 CTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAATG 320 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||||||||||| || || |||||| | | ||| Sbjct 319 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 286 >seq6 Length=36610139 Score = 360 bits (398), Expect = 6e-95 Identities = 445/602 (74%), Gaps = 5/602 (1%) Strand=Plus/Plus Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 || ||| || |||| || || | | |||| ||| |||| ||||| || |||||| Sbjct 34152484 GGGAGAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 34152543 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAG 19741 |||| || | |||| ||| |||||| ||||| | | |||||| | || ||||| || Sbjct 34152544 TCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATCGGTCAAGGAAG 34152602 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 ||| ||||||||||||||| || |||||||||||||| ||||| ||| | |||||||| Sbjct 34152603 CTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCA 34152662 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGG 19861 || || ||||| ||||||||||| || || |||||| | || || ||||| |||||||| Sbjct 34152663 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGG 34152722 Query 19862 TGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAAC 19921 || || || || ||||||||| || |||||| || || | |||| |||||| Sbjct 34152723 CGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAAC 34152782 Query 19922 AACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAA 19981 || || ||| ||| || | || || | |||||||||||| ||||| || ||||| Sbjct 34152783 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAA 34152842 Query 19982 TATTGTCGCTGCACACGGGTACTTTGG-GAGATTGATATTTCAATATGCTTCTTTCAATA 20040 ||| || || || || || || ||||| |||| || || ||||||||| |||||| | Sbjct 34152843 TATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACA 34152902 Query 20041 ATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCT 20100 | |||||||||||||| ||||| || ||| ||| || || || || || ||| |||| Sbjct 34152903 ACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTG 34152962 Query 20101 CCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAG 20160 | | || ||| ||||||||||||||||||| |||||||| || || ||||| || |||| Sbjct 34152963 CTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAG 34153022 Query 20161 TTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTC 20219 ||||| ||||| || |||| || ||||||||| | | || | |||||||| Sbjct 34153023 TTGATAGTCAA-GGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTT 34153081 Query 20220 GG 20221 || Sbjct 34153082 GG 34153083 >seq8 Length=31745509 Score = 293 bits (324), Expect = 7e-75 Identities = 351/474 (74%), Gaps = 2/474 (0%) Strand=Plus/Plus Query 19601 AATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAG 19660 || ||||||||| ||| ||| | ||||||| || || | | |||| ||| | Sbjct 5168697 AAGAGGAGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCG 5168756 Query 19661 ACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGT 19720 ||| ||||| || |||||| |||| || | |||| ||| |||||| ||||| | Sbjct 5168757 ACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGA 5168815 Query 19721 T-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTT 19779 | |||||| | || ||||| || ||| ||||||||||||||| || ||||||||||||| Sbjct 5168816 TCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT 5168875 Query 19780 TTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGC 19839 | ||||| ||| | |||||||| || || ||||| ||||||||||| || || |||||| Sbjct 5168876 TCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGT 5168935 Query 19840 TCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTA 19899 | || || ||||| |||||||| || || || || ||||||||| || |||||| | Sbjct 5168936 TAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAA 5168995 Query 19900 CTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCG 19959 | || | |||| |||||| || || ||| ||| || | || || | ||||| Sbjct 5168996 CCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCG 5169055 Query 19960 GGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATAT 20019 ||||||| ||||| || |||||||| || || || || || || ||||| |||| || | Sbjct 5169056 GGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCT 5169115 Query 20020 TTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 | ||||||||| |||||| || |||||||||||||| ||||| || ||| ||| Sbjct 5169116 TCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTT 5169169 Score = 114 bits (126), Expect = 4e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 2878685 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 2878744 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| ||||||| || || || || Sbjct 2878745 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 2878804 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || || |||||| Sbjct 2878805 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAAT 2878864 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTT 19520 |||||||| || || | |||| | || || ||||| |||||||| Sbjct 2878865 ATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTT 2878915 >seq36 Length=917149 Score = 159 bits (176), Expect = 1e-34 Identities = 201/276 (73%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || ||||| ||||| ||||| | || |||||||| || | ||||| ||| ||| Sbjct 329982 ACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTA 329923 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | || ||| || ||||| ||||||| || || || || |||||||| ||| Sbjct 329922 TTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCCATTCCTCCAGTAGATATTGAT 329863 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || ||||| || ||||| || || || | || || |||||||||||||| || || Sbjct 329862 GGTATTCGTGAACCTGTTTCAGGATCTCTACTTTATGGCAACAATATTATTTCCGGTGCC 329803 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | |||| | || || ||||| ||||||||||||| ||||||||||| | || Sbjct 329802 ATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCT 329743 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAA 19580 | ||||| |||||||||||||| ||||| ||| || Sbjct 329742 GTTGATGAATGGTTATACAACGGTGGTCCTTATGAA 329707 >seq4 Length=35924511 Score = 140 bits (154), Expect = 9e-29 Identities = 188/259 (73%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 20024 ATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGT 20083 ||||||| |||||| || |||||||||||||| ||||| || ||| ||| || || | Sbjct 4757218 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAAT 4757277 Query 20084 TGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAA 20143 | || ||| |||| | | || ||| |||||||| |||||||||| |||| ||| || Sbjct 4757278 AAGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGACTTTCAACCTAAATGATTTCAA 4757337 Query 20144 CTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTAT 20202 || ||||| || ||||||||| ||||| | |||| || || |||||| | Sbjct 4757338 TTTCAACCAATCTGTAGTTGATAGTCAA-GCCTGTGTAATTAATACTTGAGCTGATATCA 4757396 Query 20203 TAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCAC 20262 | || | ||||| || || |||||||||| ||| | ||||||||||||||| | | Sbjct 4757397 TTAACCGCGCTAATCTTGGTAAAGAAGTTATGCTCGAACATAATGCTCATAACTTCTCTC 4757456 Query 20263 TTGATTTAGCTTCGGCTGA 20281 | || |||||| | | ||| Sbjct 4757457 TAGACTTAGCTGCTGTTGA 4757475 >seq1 Length=51465339 Score = 116 bits (128), Expect = 1e-21 Identities = 184/261 (70%), Gaps = 16/261 (6%) Strand=Plus/Plus Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970 |||||||||| ||||| ||| | | || | || || | |||||||||||| ||| Sbjct 27733120 ATCAAGGAAATCACTGAAAATGAACCTGCTAATCAAGGTTACAGGTTCGGGCAAGAAGAA 27733179 Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 || | | |||||| || | | || || || |||| |||| ||||| |||| |||| Sbjct 27733180 GAAGCTTGTAATATCGTACCCACTCATGGTTATATTGGTCGATTAATATTCCAATCTGCT 27733239 Query 20031 TCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATA 20090 |||||| || |||| ||||||||| ||||| || | | | || ||||| | Sbjct 27733240 AGTTTCAACAACTCTCATTCTTTACACTTCTTCCTAG-TTGTATC----TGGTTTAC--- 27733291 Query 20091 TGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAAC 20150 | ||||| || ||| |||||||||||||||| || |||||||| | || ||| Sbjct 27733292 TAGCTTA-------AGGTATCAGCACTATGGCTTTCAATCTAAATGGTTTCAGTTTCAAC 27733344 Query 20151 CAGTCAGTAGTTGAT-GTCAA 20170 || || ||||||||| ||||| Sbjct 27733345 CAATCTGTAGTTGATAGTCAA 27733365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144433322232456