Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq4825 553 3e-152 seq6 374 1e-98 seq8 288 2e-72 seq4 147 4e-30 seq36 131 3e-25 seq7 125 1e-23 >seq4825 Length=155848 Score = 553 bits (612), Expect = 3e-152 Identities = 718/987 (73%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 1277 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 1219 Query 211629 TATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACC 211688 |||||||| | | | | ||||| | ||||| | || ||||| || || || Sbjct 1218 GATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 1159 Query 211689 TCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAA 211748 ||| || ||||| || || || |||||||| || |||| || | | ||||| ||||| Sbjct 1158 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 1099 Query 211749 CATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTAT 211808 || || || ||||| || |||| |||| || || ||||| ||||| ||||| || Sbjct 1098 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTTTTATCCAAT 1039 Query 211809 CTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAAT 211868 ||||||||| || || ||||||| ||| | ||||| ||||||||||| | || ||| Sbjct 1038 CTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGTCCTTATGAATT---AAT 982 Query 211869 C-TTC--CACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATA 211925 | ||| ||||| | | || | | |||||||| | ||||||| ||| | Sbjct 981 CGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 922 Query 211926 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTT 211985 |||| |||||||||| |||||||| |||||| |||||||| ||||| |||| ||| Sbjct 921 CCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 862 Query 211986 CGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGG 212045 ||||| ||| | | |||||| ||||||| || || || || ||||||||| |||| Sbjct 861 TGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 802 Query 212046 TATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 || || || || |||||||||||| | |||||||| || || || |||||||||||||| Sbjct 801 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 742 Query 212106 CCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCA 212165 |||||| || ||| ||| || || ||| | ||||| || | |||| ||||||||| Sbjct 741 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCA 682 Query 212166 CGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTA 212225 |||||| | || || ||| | ||| | |||||||| | || || || | Sbjct 681 TGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 622 Query 212226 TGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTT 212285 ||||||| |||||| ||||||||||| || ||||| ||||| || || ||||| || || Sbjct 621 AGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTT 562 Query 212286 CGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCT 212345 || || | |||||||| ||||| ||||||||| | ||||||||||||||| Sbjct 561 TGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCT 502 Query 212346 CGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATT 212405 || | |||||||| | || | ||||| || || | |||||| |||| ||||| || Sbjct 501 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTT 442 Query 212406 CAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCC 212465 |||||||||||| ||||| ||||||||||| || |||||| ||| || || Sbjct 441 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAA 382 Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 |||||||| |||| | ||||| | || ||||||||||||||||||||||||||| | || Sbjct 381 TACTTGGGCTGATATCATTAACCGCGCTAACCTTGGTATGGAAGTTATGCACGAACGTAA 322 Query 212526 TGCACACAACTTCCCACTTGACTTAGC 212552 ||| || |||||||| || |||||||| Sbjct 321 TGCTCATAACTTCCCTCTAGACTTAGC 295 >seq6 Length=36610139 Score = 374 bits (414), Expect = 1e-98 Identities = 449/609 (74%), Gaps = 1/609 (0%) Strand=Plus/Plus Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || ||| || |||| ||| | |||| |||||||||| |||||||| |||||| ||| Sbjct 34152484 GGGAGAGAGAGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 34152543 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| |||| ||| ||||| ||| | | |||||| ||||||| || Sbjct 34152544 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGC 34152603 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| || || || || |||||||||||| | |||||||| Sbjct 34152604 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 34152663 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 || || || |||||||||||||||||||| || ||| ||| || || ||| | ||||| Sbjct 34152664 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 34152723 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202 || | |||| ||||||||| |||||| | || || ||| | ||| | |||||| Sbjct 34152724 GGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 34152783 Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAAC 212262 || | || || || | ||||||| |||||| ||||||||||| || ||||| Sbjct 34152784 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACTTATAAT 34152843 Query 212263 ATCGTTGCTGCACATGGATACTTCGGT-AGACTTATCTTCCAGTATGCATCATTCAACAA 212321 ||||| || || ||||| || || ||| || | |||||||| ||||| |||||||| Sbjct 34152844 ATCGTAGCCGCTCATGGTTATTTTGGTCCGATTAATCTTCCAATATGCTAGTTTCAACAA 34152903 Query 212322 CAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTC 212381 | | ||||||||||||||| || | |||||||| | || | ||||| || | Sbjct 34152904 CTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACTGC 34152963 Query 212382 TATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGT 212441 | | |||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || || Sbjct 34152964 TTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGT 34153023 Query 212442 TGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGG 212501 |||| ||| || || |||||||| |||| | ||||| | || |||||||| Sbjct 34153024 TGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGCGCTAACCTTGG 34153083 Query 212502 TATGGAAGT 212510 |||||| || Sbjct 34153084 TATGGAGGT 34153092 >seq8 Length=31745509 Score = 288 bits (318), Expect = 2e-72 Identities = 342/464 (74%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||| ||| | |||| |||||||||| |||||||| |||| Sbjct 5168713 TACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTAGGTATGCGACCTTGGATTGCTGTT 5168772 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| |||| ||| ||||| ||| | | |||||| ||||||| Sbjct 5168773 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 5168832 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || || ||||||||| |||| || || || || |||||||||||| | ||| Sbjct 5168833 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 5168892 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 ||||| || || || |||||||||||||||||||| || ||| ||| || || ||| | Sbjct 5168893 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTA 5168952 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGT 212196 ||||| || | |||| ||||||||| |||||| | || || ||| | ||| | Sbjct 5168953 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGG 5169012 Query 212197 GAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACA 212256 |||||||| | || || || | ||||||| |||||| ||||||||||| || Sbjct 5169013 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGGTTCGGGCAAGAAGAAGAAACT 5169072 Query 212257 TATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTC 212316 ||||| ||||| || || ||||| || || || || | |||||||| ||||| ||| Sbjct 5169073 TATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 5169132 Query 212317 AACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGT 212360 |||||| | ||||||||||||||| || | |||||||| Sbjct 5169133 AACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGT 5169176 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 2878685 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 2878743 Query 211629 TATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACC 211688 |||||||| | | | | ||||| | ||||| | || ||||| || || || Sbjct 2878744 GATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 2878803 Query 211689 TCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAA 211748 ||| || ||||| || || || |||||||| || |||| || | | ||||| ||||| Sbjct 2878804 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGCAACAA 2878863 Query 211749 CATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTT 211799 || || || ||||| || |||| |||| || || ||||| ||||| Sbjct 2878864 TATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAGGTTTGCACTT 2878914 >seq4 Length=35924511 Score = 147 bits (162), Expect = 4e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 ||||||||||||||| || | |||||||| || || | ||||| || || | ||||| Sbjct 4757245 TTTACACTTCTTCCTAGCTGCTTGGCCTGTAATAAGTATCTGGTTTACTGCTTTAGGTAT 4757304 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | |||| ||| | ||||||||||||| ||||| ||||||||||| || |||||| || Sbjct 4757305 CAGCACTATGACTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGAT-AGTC 4757363 Query 212451 AGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 | | | || || |||||| | |||| | ||||| | || || ||||||| |||| Sbjct 4757364 AAGCCTGTGTAATTAATACTTGAGCTGATATCATTAACCGCGCTAATCTTGGTAAAGAAG 4757423 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||| |||| ||||| || |||||| | || |||||||| Sbjct 4757424 TTATGCTCGAACATAATGCTCATAACTTCTCTCTAGACTTAGC 4757466 >seq36 Length=917149 Score = 131 bits (144), Expect = 3e-25 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 329957 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 329898 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || ||||| || ||||| || || || |||||||| || | || | Sbjct 329897 TCGCCTTCATTGCCATTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCAGGAT 329838 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| || || || ||||| || |||| |||| || || | Sbjct 329837 CTCTACTTTATGGCAACAATATTATTTCCGGTGCCATTATTCCGACTTCTGCAGCTATAG 329778 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| ||||| ||||||||||| || || ||||||| ||| | ||||| |||| Sbjct 329777 GTTTGCACTTTTATCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 329718 Query 211850 GTCCTTA 211856 ||||||| Sbjct 329717 GTCCTTA 329711 >seq7 Length=36358036 Score = 125 bits (138), Expect = 1e-23 Identities = 268/391 (69%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 ||||| ||||||| || | || ||||| || || ||||| || || |||| || Sbjct 18654248 AAACCACAGTATGTGATTTTAGCAGCTGCGAAAGTCGGTGGCATTCATGCTAACAACACT 18654189 Query 194644 TATCCTGCCGATTTCATCTATGAC-AATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || ||||| ||||| || | || ||||| |||||||| ||||| |||||| | || Sbjct 18654188 TACCCTGCTGATTTTAT-TGCGATTAATCTTCAAATTCAGACCAATGTGATTGATTCGGC 18654130 Query 194703 ATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT 194762 | | ||||| |||||||| | | ||| ||||||| || || || ||||| || || Sbjct 18654129 TTTTAAGAATGGCGTTAAGAAGATTATATTTTTAGGTTCTTCGTGTATTTATCCCAAATT 18654070 Query 194763 T---CCAAAGATACCTATTACAGAGGATCAG--TTACTTG-CTAGTCCTTTGGAAGAATC 194816 | ||| | |||||| || ||| | || ||| | |||| ||||| | Sbjct 18654069 TGCGCCACA---ACCTAT---AGTGGAAAACGCTTTGTTGACGGGTCCGTTGGAGCCTAC 18654016 Query 194817 TAAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTC 194875 |||| |||| | |||| ||||| ||||| || || || | ||||||||| || ||| | Sbjct 18654015 TAATGAGTGGT-ATGCCATTGCCAAGATTGCGGGAATTAAGATGTGTCAGGCTTATAGGA 18653957 Query 194876 AGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATA 194935 |||| | ||| |||| || || |||||| |||||| | || || || ||||||| Sbjct 18653956 TTCAGTTTAATTTTGATGCTATTTCTGCAATGCCCACTAATTTGTATGGTCCAAATGATA 18653897 Query 194936 ATTTTGATATTAATAATGGTCATGTATTACC 194966 ||||| || | ||| |||||| || || Sbjct 18653896 ATTTTCATCCGGAGAATTCTCATGTTTTGCC 18653866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807506484232560