Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq8 84.2 2e-11 >seq3 Length=50312079 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/160 (75%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| || |||||||||||||||||||| ||| |||||||| || | ||||| || | Sbjct 34659068 ACAACATACATGCAAAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGA 34659009 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586 | || || |||||||| | || ||||| || | |||||| || | |||| | ||| || Sbjct 34659008 AAGTCAATCCGGGCATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCC 34658950 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATC 21626 || || ||||| || || || |||||| |||| ||||| Sbjct 34658949 GAGAAAAAAATCCCTTCCACACAAGCAAACGCAA-TAATC 34658911 >seq8 Length=31745509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| |||||||| | ||| ||||| || || | |||||| || ||||| ||| Sbjct 25722103 CAAGCAAAGTCACAATGAAGACCCTCATCTCTTGAAATAAGTTCATTTGAGAATGTCAAA 25722162 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583 || ||||| |||||||||||||| | |||||| | || | |||| ||| Sbjct 25722163 CCTGGCATCAATCCTCTCTTTTTAAGCCAAAAGA-TGGCACAAAAGCT 25722209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531868713084240