Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 seq1 95.1 2e-14 >seq3 Length=50312079 Score = 210 bits (232), Expect = 3e-49 Identities = 576/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || || || || || |||||||| || || | ||| || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| ||||| |||||||| || || | | ||||| | | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || |||||||| || || | ||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | ||| || || ||| || ||||| |||||||| | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309 |||| || |||||||| | || | || |||| | ||||| |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| || ||||||||||| || || ||| || || || || || || | ||||||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || || || | ||| || |||||||| || | ||| || || || || || ||| Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCGCGCAGAAGCTCCCCGAGAAAAAAATCCCT 34658935 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCATGTATCCACT 33487 || || |||||| ||||||| ||||| || ||| | | || ||| |||||| Sbjct 34658934 TCCACACAAGCAAACGCAATAATCCTCTCCGCA-AACGACTCCCCTC-CATCAATCCACC 34658877 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | ||||| | ||||||||| | ||||| || ||||| || || || | || | Sbjct 34658876 TCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAACC 34658817 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 || || | ||| |||| |||| | || | ||| | ||||||||| ||||||| Sbjct 34658816 TCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAAT 34658757 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 |||| || || || || |||||||| || || ||| || ||||| | | ||| || | Sbjct 34658756 GAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACCT 34658697 Query 33668 CTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 | | || || | | || |||||||| || ||| || || ||| || || ||||| Sbjct 34658696 C-CTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 || | ||||| | ||||| | || || || | || | | ||| | | || Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 |||| ||||| ||| ||||| || | ||||| || || ||||| || || || ||||| Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518 Query 33847 TTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | |||||| | | ||||| |||||||| ||| Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||||||||| || | ||| || || || || || |||||| || || | ||||| Sbjct 36403900 GTTCCCGCATTGAAAAGGGTTGGTGACGCATGAGTGAACCATCGTTGGGACATTAGATGA 36403841 Query 63672 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || |||| |||||| || || ||||| | ||| ||||| || || || || | ||| | Sbjct 36403840 TATGTCTTAATAGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAG 36403782 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||| || || || || ||||| | ||| | | || || | |||||| | || | Sbjct 36403781 CATATGTTGTGGCCTCTCAACAACCTTCCCTTGCACCTTTAAAAGGTAGGACCTCTCAAG 36403722 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||| ||||| || | || ||||||||| || || || || Sbjct 36403721 GGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATATATTAT 36403674 >seq1 Length=51465339 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 |||||||||||||| | ||| || || || || || |||||| | || | | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||| ||||| || || | ||| | || |||||| || || || | ||| | Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| || || || ||||| | ||| | || ||||| | ||||||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || ||||| || | || ||||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 |||||||| ||| | | ||||| |||||||| | ||||||| || |||| || Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 63228 ||| ||||| ||||| | ||| |||||| | || | | ||| || | || ||||| Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATAA 14682800 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 | ||||||||||||||||| || ||||| ||||| | || |||||| || Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 |||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| | Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || ||| ||||||| || || |||| || || |||||||||||||| | Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 | || | | ||||| || || | ||| ||| | ||| || || || || ||| Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || | || || ||||||| |||| || ||| || |||||| Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909620710160