Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq7 102 8e-17 seq2 93.3 4e-14 seq6 89.7 5e-13 >seq1 Length=51465339 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || |||||||| | || || ||| | |||||| | || | ||||| Sbjct 30446457 CACAATGCAGATCTTCGTAAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAATC 30446398 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | |||||| || || ||||||||||| || |||||||| Sbjct 30446397 CTCCGACACCATCGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCCGA 30446338 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| | ||||| | || ||| ||||| ||||| || | |||| | | |||||| Sbjct 30446337 CCAGCAACGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCAGAACCCTAGCCGACTA 30446278 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| |||| || ||||| Sbjct 30446277 CAACATCCAGAAGGAATCCACTCTCCACCTCGTCCT 30446242 >seq7 Length=36358036 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| | || || ||| | |||||| | || | ||||| Sbjct 14364545 CAAGATGCAGATCTTCGTGAAAACCCTCACCGGCAAAACTATCACCCTGGAGGTGGAATC 14364604 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||| ||||| | |||||| |||||| ||||||||||| || || || || Sbjct 14364605 CTCCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGCATCCCGCCGGA 14364664 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || | ||||| | || |||||| || ||||| || | |||| | | |||||| Sbjct 14364665 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTA 14364724 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || || || Sbjct 14364725 CAACATCCAGAAGGAGTCCACTCTCCACCTCGTTCT 14364760 >seq2 Length=43913520 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || || ||||| |||| || || | ||||| |||| | || || Sbjct 31249573 CAAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTC 31249632 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 31249633 TTCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCGGA 31249692 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || | ||||| | || ||| || || || || || | |||| | | |||||| Sbjct 31249693 CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCCGACTA 31249752 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| |||| || ||||| Sbjct 31249753 CAACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 31249788 >seq6 Length=36610139 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | || ||| | || | ||| Sbjct 34406532 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAGACCATAACCCTTGAGGTTGAAAGCTCT 34406591 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| |||||| ||||| ||||| || ||||||||||| Sbjct 34406592 GACACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAG 34406651 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | | |||||||| ||||| |||| || || | ||| |||||||| Sbjct 34406652 CAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAG-GACTTTAGCTGACTATAA 34406710 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || | ||| |||| || Sbjct 34406711 TATTCAGAAGGAATCCACCCTTCATTTGGTTCT 34406743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633524690720