Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 5e-12 seq1 87.8 5e-12 >seq3 Length=50312079 Score = 87.8 bits (96), Expect = 5e-12 Identities = 334/511 (65%), Gaps = 15/511 (3%) Strand=Plus/Plus Query 22436 AGAATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGAACGT 22494 |||| ||||| | |||||| ||| ||||| || | | || | || ||||| | Sbjct 34658853 AGAAGAAGGCCAAGTGGGCGATGAGGTGGATTGATGGAGGGGAGT-CGTTTGCGGAGAGG 34658911 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTT 22553 ||||||| |||||| || ||||| ||||| || || || ||| || || || || || Sbjct 34658912 ATTATTGCGTTTGCTTGTGTGGAAGGGATTTTTTTCTCGGGGAGC-TTCTGCGCGATTTT 34658970 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||||| || || | | ||||||| || | || || || |||||| | ||| | Sbjct 34658971 TTGGCTGAAGAAGAGGGGGCTTATGCCCGGATTGACTTTCTCGAATGAGCTGATTTCGAG 34659030 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 ||||||||||| ||| |||||||| |||||| | ||| || | | | || | Sbjct 34659031 GGATGAGGGTCTGCATTGTGATTTTGCATGTATGTTGTAT--GATT--TGTTGAGGATGA 34659086 Query 22674 ACTTCCATATGA--AAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730 | || ||| | | || | ||| | | |||| ||||| |||| | Sbjct 34659087 A--GCCGAGTGAGGAGCGGGTTAAGGGGATTGTAGCGGATGCGGTTGAGATTGAGAGGGA 34659144 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAG-TCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 ||| |||| || || || || || | | | |||| || |||| || | |||||| Sbjct 34659145 GTTTGTTTGTGATGCTTTGCC-GTGTGCTTTGGTTGGGATGAATGGGGATTTGATGAGTC 34659203 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 |||||||| ||||| || ||| | | || | | || |||| ||| |||| Sbjct 34659204 AGTATATTAAGTTTGTGGCGGATAGGTTGTTGGGAGCGTTGGGGTATGGGAAGATGTATA 34659263 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | || ||||||||||| |||||||| | ||||| | | || ||||| ||||||| Sbjct 34659264 ATGTGCAGAATCCATTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACTAATTTCT 34659323 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || || ||||||| || || || || || Sbjct 34659324 TTGAGAAGCGAGTTGGGGAGTATCAGAAGGC 34659354 >seq1 Length=51465339 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | | || | | || || |||||||||||||| ||||||||||| Sbjct 41028772 CAGTTCTATGTAGCCAATGGCGAGTTATCTTGTCAAATGTATCAGCGCTCTGCTGATATG 41028831 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| |||||||| || || |||||| || ||||| | || ||| | || |||||| Sbjct 41028832 GGTCTCGGTGTTCCATTCAACATTGCATCATATGCACTTTTGACATGCATGATTGCTCAT 41028891 Query 111822 TTT 111824 || Sbjct 41028892 GTT 41028894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303273009573932