Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 seq6 96.9 3e-15 seq1 96.9 3e-15 seq2 93.3 4e-14 seq3 84.2 2e-11 >seq7 Length=36358036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| | || || ||| | || ||| | || || || | Sbjct 14364545 CAAGATGCAGATCTTCGTGAAAACCCTCACCGGCAAAACTATCACCCTGGAGGTGGAATC 14364604 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||| ||||| | |||||| |||||| |||||||||||||| || || || Sbjct 14364605 CTCCGACACAATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGCATCCCGCCGGA 14364664 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||||||||| ||||| || | ||||| | | ||| || Sbjct 14364665 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTA 14364724 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 14364725 CAACATCCAGAAGGAGTCCAC 14364745 >seq6 Length=36610139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| | || || || | Sbjct 34406532 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAGACCATAACCCTTGAGGTTGAAAGCTCT 34406591 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| |||||||| ||||||||||| Sbjct 34406592 GACACAATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCCGATCAG 34406651 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||||| || ||||| |||| || || | ||| || ||||| Sbjct 34406652 CAGAGGCTTATCTTTGCGGGCAAACAGCTCGAGGATGGAAG-GACTTTAGCTGACTATAA 34406710 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || ||||||| || Sbjct 34406711 TATTCAGAAGGAATCCACCCTTCATTTGGT 34406740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | |||||| | || || ||| | Sbjct 34641802 ATGCAAATCTTTGTCAAGACGCTTACTGGAAAGACAATTACCTTGGAGGTAGAGAGCTCT 34641861 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || |||||| |||||||| || || ||||| ||||| Sbjct 34641862 GATACAATTGACAATGTTAAGGCAAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAG 34641921 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | | || ||||| | || || | || | | | || ||||| || Sbjct 34641922 CAGAGGTTGATATTTGCTGGGAAGCAGTTGGAGGACGGAAGGA-CATTGGCAGATTACAA 34641980 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| ||||| ||| ||||||| || || || |||| || ||| Sbjct 34641981 CATTCAAAAGGAATCCACACTTCATTTGGTATTGAGGCTGAGGGGTGGA 34642029 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || || ||||| | || || | || || ||| | Sbjct 34079581 AATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34079640 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | |||||| ||||||| |||||||| ||||| || || || || Sbjct 34079641 CGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAAGAGGGCATCCCACCAGACCA 34079700 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167 ||||| || || | | || || ||||| ||||||| | | | || | || || || Sbjct 34079701 GCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTT--GCAGACTAC 34079758 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||||||||| ||||| | ||| | ||| Sbjct 34079759 AATATTCAAAAAGAGTCTACCCTCCATCTTGTG 34079791 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || || ||||| | || || | || || ||| | Sbjct 34642029 AATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34642088 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| ||||||| ||||| || ||||| || || || || Sbjct 34642089 TGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 34642148 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167 ||||| || || | | || || ||||| ||||||| | | | || | || || || Sbjct 34642149 GCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTT--GCAGACTAC 34642206 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||||||||| ||||| ||||| | ||| Sbjct 34642207 AATATTCAAAAAGAGTCTACCCTTCATCTTGTG 34642239 >seq1 Length=51465339 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || |||||||| | || || ||| | || ||| | || || || | Sbjct 30446457 CACAATGCAGATCTTCGTAAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAATC 30446398 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | |||||| || || |||||||||||||| |||||||| Sbjct 30446397 CTCCGACACCATCGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCCGA 30446338 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || | || || | || ||| || || ||||| || | ||||| | | ||| || Sbjct 30446337 CCAGCAACGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCAGAACCCTAGCCGACTA 30446278 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 30446277 CAACATCCAGAAGGAATCCAC 30446257 >seq2 Length=43913520 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 31249573 CAAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTC 31249632 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||| | ||||| ||||| |||||||||||||| ||||| || Sbjct 31249633 TTCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCGGA 31249692 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||| ||||| || || || | ||||| | | ||| || Sbjct 31249693 CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCTAGCCGACTA 31249752 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 31249753 CAACATCCAGAAGGAGTCCAC 31249773 >seq3 Length=50312079 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || |||||||| | ||||| || Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| ||||| || || || || || || || Sbjct 6143784 GATACAATTGACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 6143843 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | || |||||| | || |||| || | | | || ||||| || Sbjct 6143844 CAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGA-CATTGGCTGATTACAA 6143902 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| ||||| || ||||| | || || || |||||||| || Sbjct 6143903 CATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGG 6143950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429910712508030