Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq3 91.5 1e-13 >seq6 Length=36610139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||| || || | || ||||| ||||| || | || |||| | Sbjct 34079581 AATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34079640 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||||| ||| | || ||| ||| ||| || ||||| ||| |||| || || Sbjct 34079641 CGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAAGAGGGCATCCCACCAGACCA 34079700 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||| | ||| || |||||| | ||||||| | || | || || || || Sbjct 34079701 GCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACAA 34079760 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||||| | ||| | ||| Sbjct 34079761 TATTCAAAAAGAGTCTACCCTCCATCTTGTG 34079791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || | || ||||| ||||| || | || |||| | Sbjct 34642029 AATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATCACGCTAGAGGTGGAGAGCTC 34642088 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | || ||| ||| ||| || || || ||| |||| || || Sbjct 34642089 TGACACTATTGATAATGTCAAAGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 34642148 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||| | ||| || |||||| | ||||||| | || | || || || || Sbjct 34642149 GCAGAGGCTTATATTTGCTGGAAAACAACTTGAAGATGGCCGCACACTTGCAGACTACAA 34642208 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||||| | ||| | ||| Sbjct 34642209 TATTCAAAAAGAGTCTACCCTTCATCTTGTG 34642239 >seq3 Length=50312079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| ||||| || || ||||| || || || |||||| | ||| || || | Sbjct 6143724 ATGCAAATCTTTGTTAAGACTCTCACTGGGAAGACGATTACCCTTGAAGTAGAAAGTTCT 6143783 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| |||||| || || || || | ||| || Sbjct 6143784 GATACAATT---GACAATGTGAAAGCGAAAATTCAAGACAAGGAGGGAATTCCCCCAGAC 6143840 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || | |||| ||| || || ||||| || |||| | || |||| ||||| Sbjct 6143841 CAGCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAGGATGGTAGGACATTGGCTGATTAC 6143900 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||| | ||| |||| ||||| ||| |||| || Sbjct 6143901 AACATTCAAAAGGAATCCACTCTTCATCTGGTATTGAGGTTGAGAGGTGG 6143950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425318982595120