Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7 120 2e-22 seq1 114 1e-20 seq2 111 1e-19 seq6 104 2e-17 seq3 95.1 1e-14 >seq7 Length=36358036 Score = 120 bits (132), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | |||| || ||||||| | || Sbjct 14364751 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGC 14364692 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 ||||| || | || || ||||| |||||| || | ||| |||||||| || || Sbjct 14364691 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCTTTGTCTTGAATCTTG 14364632 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| || ||| |||| |||||| ||||| |||| Sbjct 14364631 GCT--TTGACATTGTCGATTGTGTCGGAGGATTCCACCTCCAGGGTGATAGTTTTGCCGG 14364574 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| || || |||||||| ||| Sbjct 14364573 TGAGGGTTTTCACGAAGATCTGCATCTTG 14364545 >seq1 Length=51465339 Score = 114 bits (126), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || |||||||||||||| | |||| || ||||||| | ||| Sbjct 30446251 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGT 30446310 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || || ||||| ||| | ||| |||||||| || || Sbjct 30446311 TTTCCGGCGAAGATGAGGCGTTGCTGGTCGGGAGGGATGCCTTCTTTGTCTTGGATTTTG 30446370 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| || ||| |||| |||||||||||| |||| Sbjct 30446371 GCT--TTGACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTGATGGTTTTGCCGG 30446428 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| || || ||||||||| || Sbjct 30446429 TGAGGGTTTTTACGAAGATCTGCATTGTG 30446457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || || || |||||||| || |||||||||||||| Sbjct 45560787 CCACCACGGAGCCTGAGGACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCA 45560728 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | ||||| | || || || ||| | || | || ||| ||||| || Sbjct 45560727 AGGGTCCTGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 45560668 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||| | ||| Sbjct 45560667 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATCGTGTCAGAGCTCTCGA 45560610 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || |||| || ||||| || |||||||| Sbjct 45560609 CTTCAAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAAGATCTGCAT 45560561 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || || ||||||||||| | ||| || |||| Sbjct 45560544 AGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCTGCCGTCT 45560485 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| || | || | || ||| ||||| || | ||| || || || Sbjct 45560484 TCAAGTTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 45560425 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | |||||| | || || | ||||||||| Sbjct 45560424 TGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCGACCTCAAGGGTGATGGTC 45560365 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| ||||| || ||||| Sbjct 45560364 TTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 45560333 >seq2 Length=43913520 Score = 111 bits (122), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | |||| || ||||||||| || Sbjct 31249779 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAGCTGC 31249720 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | ||| |||||||| || || Sbjct 31249719 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGGATCTTG 31249660 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | ||| || | |||||||| || |||| Sbjct 31249659 GC--CTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGG 31249602 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| || || |||||||||||| Sbjct 31249601 TTAGGGTTTTCACGAAGATCTGCATTTTG 31249573 >seq6 Length=36610139 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||||| ||||| ||| || ||||| |||||||| |||||||| || |||| || | Sbjct 34642019 AGCCTCAATACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCTGCCAATGTCCTT 34641960 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 |||||||||| || || || ||| | || | || ||| || || ||| | |||||| Sbjct 34641959 CCGTCCTCCAACTGCTTCCCAGCAAATATCAACCTCTGCTGATCTGGAGGAATTCCCTCT 34641900 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGG 16895 ||||| || ||||| ||| || | | | | || || | ||| |||| || Sbjct 34641899 TTGTCTTGGATCTTTGC--CTTAACATTGTCAATTGTATCAGAGCTCTCTACCTCCAAGG 34641842 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| |||||||| || ||||| Sbjct 34641841 TAATTGTCTTTCCAGTAAGCGTCTTGACAAAGATTTGCAT 34641802 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || || | ||| || || ||||| ||||| || |||||||| || Sbjct 34079809 CCCCCCACGGAGACGGAGCACAAGATGGAGGGTAGACTCTTTTTGAATATTGTAGTCTGC 34079750 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | |||||| || ||| | ||||||| ||| ||||| || Sbjct 34079749 AAGTGTGCGGCCATCTTCAAGTTGTTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGG 34079690 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || |||||| || || | | | ||||||| | |||| Sbjct 34079689 GATGCCCTCTTTGTCTTGAATCTTTGCT--TTGACATTATCAATAGTGTCGGAGCTCTCC 34079632 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||| ||||| |||| || || ||||||||||||||| Sbjct 34079631 ACCTCTAGCGTGATGGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCATT 34079581 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| |||| |||| | | |||||||| || Sbjct 34080012 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTTCTTCCATCCTCCAACTGC 34079953 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | |||||||| || || | ||||||||||| |||| | Sbjct 34079952 TTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTC 34079893 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || || | ||| |||| ||||||||| || |||||| Sbjct 34079892 GCCTTCACGTTATCAATTGTATCTGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCGGTC 34079833 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| Sbjct 34079832 AATGTCTTCACAAAGATTTGCAT 34079810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || || |||||||| || || ||||||||||| ||| Sbjct 34642484 CCACCACGTAGACGAAGAACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCC 34642425 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | |||||||| || || || ||| |||| | |||||||| || || Sbjct 34642424 AGGGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAAATCAAACGCTGTTGATCTGGTGGG 34642365 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| |||| | |||||| | | | || || | ||| Sbjct 34642364 ATTCCCTCTTTGTCCTGGATTTTCGCCTTCACATTATCAATTGTATCTGAGCTCTCAACC 34642305 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || || |||| || || ||||| || |||||| Sbjct 34642304 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATTTGCATT 34642257 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||||||||||| ||| || ||||| ||||| || || ||||| || |||| || | Sbjct 34407433 AGCCTCAGTACCAAATGGAGTGTGGATTCCTTCTGAATATTGTAATCAGCCAATGTCCTT 34407374 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | |||||||| || ||||| ||| |||| | || ||| |||||| || | || || Sbjct 34407373 CCATCCTCCAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATTCCTTCC 34407314 Query 16838 TTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCGTTTCCAC 16893 ||||| || ||||| |||||| | | | | ||| ||| | || ||| | Sbjct 34407313 TTGTCTTGGATTTTTGC--CTTCACATTGTC--AATTGTATCCGAACTTTCTACTTCAAG 34407258 Query 16894 GGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || || || || || |||||||| || ||||| Sbjct 34407257 GGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCAT 34407216 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || || ||||| || ||||||||||| || Sbjct 34641800 CCACCACGTAGACGGAGCACCAAATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCA 34641741 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || ||||| ||| |||| || | ||| ||||| || Sbjct 34641740 AGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGGGGG 34641681 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | |||||| | || Sbjct 34641680 ATGCCCTCCTTGTCCTGGATCTTAGCT--TTAACATTATCAATAGTGTCAGAGCTTTCAA 34641623 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| ||||| || || || || ||||| |||||||| Sbjct 34641622 CTTCTAGGGTGATGGTCTTTCCAGTAAGTGTCTTAACAAAGATCTGCAT 34641574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || || || ||||| || | || | | ||| Sbjct 34406743 AGAACCAAATGAAGGGTGGATTCCTTCTGAATATTATAGTCAGCTAAAGTCCTTCCATCC 34406684 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||||||||| | ||||||| ||| || || ||| | ||| || ||||| Sbjct 34406683 TCGAGCTGTTTGCCCGCAAAGATAAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCT 34406624 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | || || | ||| ||||| Sbjct 34406623 TGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCAAGGGTTATGGTC 34406564 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| ||||| |||||||| Sbjct 34406563 TTTCCGGTAAGAGTTTTCACAAAGATCTGCAT 34406532 >seq3 Length=50312079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||| || || ||||||||||| || ||||||||||| Sbjct 6144179 CCCTCCACGCAGACGAAGCACCAGATGAAGGGTAGACTCCTTTTGAATATTGTAGTCGGC 6144120 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||||| || || || ||| | ||||||| ||| ||||| || Sbjct 6144119 CAGTGTGCGGCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCTGGTGG 6144060 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || |||||| ||||| | | | ||||| | ||| Sbjct 6144059 GATGCCTTCCTTGTCCTGAATCTTTGCT--TTCACATTATCAATGGTGTCTGAGCTCTCA 6144002 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || ||||| || || ||||| |||||||| Sbjct 6144001 ACCTCAAGTGTGATAGTCTTCCCAGTCAGAGTCTTCACAAATATCTGCAT 6143952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| | ||||| ||||| ||| || ||||| |||||||| |||||||| || ||| Sbjct 6143950 CCACCTCTCAACCTCAATACCAGATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 6143891 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||||||| || || ||| |||| | || ||| ||||| || Sbjct 6143890 AATGTCCTACCATCCTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 6143831 Query 16829 ACGCCCTCTTTGTCGGCAATTT 16850 | ||||| ||||| ||||| Sbjct 6143830 ATTCCCTCCTTGTCTTGAATTT 6143809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405064173989740