Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 179 5e-40 seq1 123 3e-23 >seq3 Length=50312079 Score = 179 bits (198), Expect = 5e-40 Identities = 569/873 (65%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || || || || || || || || || |||||||| || || | || || || Sbjct 34659351 TTCTGATACTCCCCAACTCGCTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 34659292 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| |||||||| || || | | ||||| | | | Sbjct 34659291 TCCATCCAATCAAATGGATTCTGCACATTATACATCTTCCCATACCCCAACGCTCCCAAC 34659232 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || ||||| || ||||| | ||||| |||||| || | |||||| || | | Sbjct 34659231 AACCTATCCGCCACAAACTTAATATACTGACTCATCAAATCCCCATTCATCCCAACCAAA 34659172 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | || | ||| || || ||| || ||||| ||||| || | || ||| Sbjct 34659171 GCACACGGCAAAGCATCACAAACAAACTCCCTCTCAATCTCAACCGCATCCGCTACAATC 34659112 Query 32610 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 32666 | || || |||||||| | || | || |||| | ||||| |||||| Sbjct 34659111 CCCTTAACCCGCTCCTCACTCGGCTTCATCCTCAACAAATCATACAACAT---ACATGCA 34659055 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| || || |||||||| || || ||| | || || || || || | ||||||| Sbjct 34659054 AAATCACAATGCAGACCCTCATCCCTCGAAATCAGCTCATTCGAGAAAGTCAATCCGGGC 34658995 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAATTCC 32785 || || || | ||| || |||||||| || | |||| | | ||| || || ||||| || Sbjct 34658994 ATAAGCCCCCTCTTCTTCAGCCAAAAAATCG-CGCAGAAGCTCCCCGAGAAAAAAATCCC 34658936 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCATGTATCCAC 32843 ||| || ||||| ||||||| ||||| || ||| | | || ||| |||||| Sbjct 34658935 TTCCACACAAGCAAACGCAATAATCCTCTCCGCA-AACGACTCCCCTC-CATCAATCCAC 34658878 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 | ||||| | ||||||||| | ||||| || || ||||| || || | || | Sbjct 34658877 CTCATCGCCCACTTGGCCTTCTTCTCGACACACGGAATCGTCTCAATCGCCCTGAACAAC 34658818 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 || || | ||| |||| ||| | || | ||| | ||||||||| |||||| Sbjct 34658817 CTCGCCTTCTCCTCCGAATCCTTAATATAACTCTCCAACAACAAACTATACATCTCCGAA 34658758 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACT 33023 ||||| || || || || || ||||| || || || || ||||| | | ||| || Sbjct 34658757 TGAATATTCTCTATCGCAATCTGAAACCCATAAAAAGCCCTCGCCTCCGCCACCTGCACC 34658698 Query 33024 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33083 || | ||| | | || ||||| || ||| || || ||| || || ||||| Sbjct 34658697 TCCTTCATAAACCTCCCGGCCAAATTCTCGAGCACAATGCCATCAGAAGCGGCGAAAAAA 34658638 Query 33084 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33143 || | ||||| | ||||| | || || || | || | | ||| | | || Sbjct 34658637 GCGAGAACATGGGTAATAAAGTGCTTCTCATCAGAAGTCAAAGCTTCCCAGTGAACATTA 34658578 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 |||| ||||| ||| ||||| || | ||||| || || ||||| || || || ||||| Sbjct 34658577 TCTTGAGATAAATCGACTTCCTCGGCGGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATC 34658518 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 | |||||| | | | ||||||||||| || ||| Sbjct 34658517 TCCCAGATCTGAGGGTATTGAATTGGGAACATA 34658485 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| |||| ||| |||| | | |||||||| ||||||| Sbjct 36375076 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATACCA 36375017 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||||||||| || || ||||| || ||| | ||||| |||||| || || Sbjct 36375016 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTAGCACGGATATTATGAAGAGAC 36374957 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || || ||||| ||| Sbjct 36374956 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAATGTGTCATATATG 36374897 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || ||||| |||||| |||| || || || |||||| Sbjct 36374896 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36374855 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| |||| ||| |||| | | |||||||| ||| ||| Sbjct 36404322 CCCCCTTGATCAACATAGCGAGCAGTGTCATTGAAAACACGAAGCATTGGAACAATGCCA 36404263 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||||||||| || || ||||| || ||| ||||||| |||||| || || Sbjct 36404262 TTGGATGTACCATTTGTTCCACGAATATAACTACCAGTGGCACGGATATTATGAAGAGAC 36404203 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || || ||||| ||| Sbjct 36404202 ACACCGATTCCTCCAGCTGATTTGCTGATCACAGCACACTCCTTCAAAGTGTCATATATG 36404143 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || ||||| |||||| |||| || || || |||||| Sbjct 36404142 CCTTCAATACTGTCATCCTTCATACAAACCAGGAAGCAGCTA 36404101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||||||||| || | ||| || || || ||||| |||||| || || | ||||| Sbjct 36403900 GTTCCCGCATTGAAAAGGGTTGGTGACGCATGAGTGAACCATCGTTGGGACATTAGATGA 36403841 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || |||| |||||| || || ||||| | ||| ||||| || || || || | ||| | Sbjct 36403840 TATGTCTTAATAGCAGAATCAATATCATCCTTG-TGAATCCCAACAGCAACTCTCATCAG 36403782 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || || ||||| | ||| | | || || | |||||| | || | Sbjct 36403781 CATATGTTGTGGCCTCTCAACAACCTTCCCTTGCACCTTTAAAAGGTAGGACCTCTCAAG 36403722 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||| ||||| || | || ||||||||| || || || || Sbjct 36403721 GGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATATATTAT 36403674 >seq1 Length=51465339 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 |||| ||||| ||||| | ||| | || |||| ||| |||| | | |||||||| | Sbjct 14682345 TTGTGGCCTCCTTGATCAACGTAACAGGCAGTGTCATTGAAAACACGGAGCATTGGAACA 14682286 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||||||||||||||| |||||| |||| || || |||||||||||||| | Sbjct 14682285 ATTCCATTGGATGTACCATTAGTCCCTCGAATATGACTGCCTGTGGCACGAATATTATGA 14682226 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 | || | | ||||| || || | ||| ||| | ||| || || || |||||| Sbjct 14682225 ACAGAAACGCTAATTCCTCCAGCTAATTTGCTGATAATTGCACACTCCTTCAAAGTATCA 14682166 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || |||| || ||| |||||||| |||| || ||| || |||||| Sbjct 14682165 TATATGCGTTCAATATTATCATCCTTCATACAAACTAGGAAGCAGCTA 14682118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 |||||||||||||| | ||| || || || ||||| |||||| | || | | || | Sbjct 14681980 GTTCCCGCATTAAAAAGGGTTGGTGATGCATGAGTGAACCATCGCTGGGACATCAAATGG 14681921 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| ||||| || || | ||| | || |||||| || || || | ||| | Sbjct 14681920 TATGTCTTGATAGCAGATTCAACATCATCCTTATAAATTCCAACAGCAACTCTCATCAGA 14681861 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || || || ||||| | ||| | || ||||| | ||||||| | |||| Sbjct 14681860 ATGTGTTGTGGCCTCTCAACAACCTTCCCCTCAATCTTCAAAAGGTAGGATCTCTCCAGG 14681801 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| || | || ||||||||| || ||||| || Sbjct 14681800 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATTAT 14681754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 62966 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCA 63025 |||||||| ||| | | ||||| |||||||| | ||||||| || ||| || Sbjct 14682917 TCTCTTTCATATTGGGCATACAGGTTCTCGAACTCTTGTCCCCAACAATCAGCCAAGCCT 14682858 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--ACTCGTTTCATAA 63083 ||| ||||| ||||| | ||| |||||| | || | | ||| || | || ||||| Sbjct 14682857 GGAGCTTCATTTGGACAGAACAAGGACCACACACCAT--TGCTTTGTACCCTTTCCATAA 14682800 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 | ||||||||||||||||| || ||||| ||||| | || |||||| || Sbjct 14682799 ATAGATCAGGAATCCAAAGGGCATAAAATAAATCTCGAGCTCGATGTTCTTC 14682748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633593776149600